View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14729_high_2 (Length: 285)
Name: NF14729_high_2
Description: NF14729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14729_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 269
Target Start/End: Complemental strand, 31172848 - 31172618
Alignment:
| Q |
37 |
agtaattagcaccttatacttaatgtgtgagtttcacatatatactttttaaacaaaaataaatatataatacttgataatcaatcttaaatcacgtgtc |
136 |
Q |
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| T |
31172848 |
agtaattaacaccttatacttaatgtgtgagtttcacttacatactttttaaacaaaaataaataaataatactagataatcaatcttaaatcacgtgtc |
31172749 |
T |
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| Q |
137 |
ttccatatttttaacctaaaatgattatttatattttagcatgtctttgagaacagtaatgtttgtgaattctaaccaagattctatgctcaactttgcc |
236 |
Q |
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| T |
31172748 |
ttccatatttttaacctaaaatg---atttatattttagcatgtctttgagaacattaatgtttgtgaattctaaccgagattctatgctcaactttgcc |
31172652 |
T |
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| Q |
237 |
aagacaattataatcaag-gttagaaggagataa |
269 |
Q |
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| T |
31172651 |
aagacatttataatcaagagttagaaggagataa |
31172618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 31202342 - 31202177
Alignment:
| Q |
75 |
tatatactttttaaacaaaaataaatatataatacttgataatcaatcttaaatcacgtgtcttccatatttttaacctaaaatgattatttatatttta |
174 |
Q |
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| T |
31202342 |
tatatatttttgaatcaaaaataaataaaaaatactagataatcaatcttaaatcatgcgtcttcaaattttttaacctaaaatgattattcatatttta |
31202243 |
T |
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| Q |
175 |
gcatgtctttgagaacagtaatgtttgtgaattctaaccaagattctatgctcaactttgccaaga |
240 |
Q |
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| T |
31202242 |
gcatgtctttgatgatattaatgtttgtgaattctaaccaagattctttgtacaactttaccaaga |
31202177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 31190553 - 31190413
Alignment:
| Q |
82 |
tttttaaacaaaaataaatatataatacttgataatcaatcttaaatcacgtgtcttccatatttttaacctaaaatgattatttatattttagcatgtc |
181 |
Q |
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| T |
31190553 |
ttttaaaacaaaaataaataaagaatactagataatcaatcttaaatcacgtatcttcaat-tttttaacctaaaatgattatttacattttaacatgtc |
31190455 |
T |
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| Q |
182 |
tttgagaacagtaatgtttgtga--attctaaccaagattct |
221 |
Q |
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| T |
31190454 |
ttcgatgacattaatgtttgtaaatattctaaccaagattct |
31190413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 31151382 - 31151247
Alignment:
| Q |
60 |
tgtgtgagtttcacatatatacttttt-aaacaaaaataaatatataa------tacttgataatcaatcttaaatcacgtgtcttccatatttttaacc |
152 |
Q |
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| T |
31151382 |
tgtgtgagtttcacttatagacattttgaaacaaaaataaaaaaataaaaaaaatactagataatcaatcttaaatcacgagtcttcaat-tttttaaca |
31151284 |
T |
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| Q |
153 |
taaa----atgattatttatattttagcatgtctttg |
185 |
Q |
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| T |
31151283 |
taaagaaaatgattatttatattttagcatgtctttg |
31151247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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