View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14729_high_4 (Length: 227)
Name: NF14729_high_4
Description: NF14729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14729_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 18108357 - 18108137
Alignment:
| Q |
7 |
agtgcagatattacttgtgctgagagtattacatgatgggaaagattaagaagaaagctacaaatttgtgatgttatctttgcaattttaattcaagttc |
106 |
Q |
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| T |
18108357 |
agtgcggatattacttatgctgagatgattacatgatgggaaagattaagaagaaagctacaaatttgtgatgttatctttgcaattttaattcaagttc |
18108258 |
T |
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| Q |
107 |
ttacaattgcaactcacgtattgcttgaccaacaaggaagctacacacgcatcaactttttaattttgattttcctctaacagttatggtaaacaaaggc |
206 |
Q |
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| T |
18108257 |
ttacaattgcaactcacatattgcttgaccaagaaggaagctacacacgcatcaactttttaattttgattttcctcgaacagttatggtaaacaaaggc |
18108158 |
T |
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| Q |
207 |
aaatgagttataatctcatga |
227 |
Q |
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|||||| |||||||||||||| |
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| T |
18108157 |
aaatgaattataatctcatga |
18108137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 1773722 - 1773771
Alignment:
| Q |
69 |
aatttgtgatgttatctttgcaattttaattcaagttcttacaattgcaa |
118 |
Q |
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| T |
1773722 |
aatttgtgatgttaactttgcaatttcaattcaagtttttacaattgcaa |
1773771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 52690902 - 52690978
Alignment:
| Q |
73 |
tgtgatgttatctttgcaattttaattcaagttcttacaattgcaactcacgtattgcttgaccaacaaggaagcta |
149 |
Q |
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| T |
52690902 |
tgtgatgttatctttacaattttaattcaagattttacaattgcaattcacgtcttgctcgactaagaaggaggcta |
52690978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 20397489 - 20397408
Alignment:
| Q |
69 |
aatttgtgatgttatctttgcaattttaattcaagttcttacaattgcaactcacgtattgcttgaccaacaaggaagctac |
150 |
Q |
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||||||||| |||||||||| ||||||||||| ||| |||||||||||| |||| | ||||| |||||| ||| ||||||| |
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| T |
20397489 |
aatttgtgaggttatctttgagattttaattcatgtttttacaattgcaattcacttcttgctcgaccaaaaagaaagctac |
20397408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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