View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14729_low_1 (Length: 558)
Name: NF14729_low_1
Description: NF14729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14729_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 20 - 558
Target Start/End: Original strand, 55161924 - 55162462
Alignment:
| Q |
20 |
ggtcatttctcaaaggtggatttcttctcaattctccttcaaattcatctaccatcttctttcataactcagatggaaaagatgtggatatagatatagc |
119 |
Q |
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| T |
55161924 |
ggtcatttctcaaaggtggatttcttctcaattctccttcaaattcatctaccatcttctttcataactcagatggaaaagatgtggatatagatatagc |
55162023 |
T |
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| Q |
120 |
aagtcaatcactgcagccatttactcatcaccaatggagaatcaaccaacaatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagca |
219 |
Q |
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| T |
55162024 |
aagtcaatcattgcagccatttactcagcaccaatggagaatcaaccaacaatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagca |
55162123 |
T |
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| Q |
220 |
ctcacacttcaaattaaaaacaattt-----ggtgtctcataggtaaggtatatattaaaagatatatagaagaatctaattatagttttgtctctctga |
314 |
Q |
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| T |
55162124 |
ctcacacttcaaattaaaaacaatttaatttggtgtctcataggt-----atatattaaaagatatatagaagaatctaattatagttttgtctctctga |
55162218 |
T |
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| Q |
315 |
tttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagaccctaatggaaagaaattacaaggagcttctgtgtttgtagagcaaatatcaaaaga |
414 |
Q |
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| T |
55162219 |
tttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagaccctaatggaaggaaattacaaggagcttctgtgtttgtagagcaaatatcaaaaga |
55162318 |
T |
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| Q |
415 |
ctttcctattggctctgcgatatcaaagaccattcttggcaacataccatatcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgag |
514 |
Q |
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| T |
55162319 |
ctttcctattggctctgcgatagcaaagaccattcttggcaacataccatatcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgag |
55162418 |
T |
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| Q |
515 |
cttaaatggtatgccacagagcctcatgaaggcagagtcgacta |
558 |
Q |
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| T |
55162419 |
cttaaatggtatgccacagagcctcatgaaggcagcgtcaacta |
55162462 |
T |
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