View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14729_low_4 (Length: 234)
Name: NF14729_low_4
Description: NF14729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14729_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 32802929 - 32802724
Alignment:
| Q |
12 |
agtagcaaaggatcaaattatcctagtttggatacatcgccaataaatgaaacaaaaaacatagtagcttaaggccggccatttgataccatcacatatt |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802929 |
agtaccaaaggatcaaattatcctagtttggatacatcgccaataaatgaaacaaaaaacatagtagcttaaggccggccatttgataccatcacatatt |
32802830 |
T |
|
| Q |
112 |
ctcctctcatcccacgtccaaaccaaaacatagatatggacacttacaacattgtactaacatcaatttttgaaggaacatacaaagaaaacctagtaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802829 |
ctcctctcatcccacgtccaaaccaaaacatagatatggacacttacaacattgtactaacatcaatttttgaaggaacatacaaagaaaacctagtaaa |
32802730 |
T |
|
| Q |
212 |
catcgt |
217 |
Q |
| |
|
|||||| |
|
|
| T |
32802729 |
catcgt |
32802724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University