View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_high_1 (Length: 603)
Name: NF1472_high_1
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 34437113 - 34437706
Alignment:
| Q |
1 |
ttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtcatcagtgaaatttaagaatgcttcag |
100 |
Q |
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| T |
34437113 |
ttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtcatcagtgaaatttaagaatgcttcag |
34437212 |
T |
|
| Q |
101 |
aacaagttgcattggaaataatcagcatggcaacatcagaagaaacaaatgtgtgccttgtgaataaaggaaaaggaattccttttatctcagcattgga |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437213 |
aacaagttgcattggaaacaatcagcatggcaacatcagaagaaacaaatgtgtgccttgtgaataaaggaaaaggaattccttttatctcagcattgga |
34437312 |
T |
|
| Q |
201 |
acttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagatgggacattggttcatttaatggaagt |
300 |
Q |
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| T |
34437313 |
acttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagatgggacattggttcatttaatggaagt |
34437412 |
T |
|
| Q |
301 |
ggtagatatcaagatgatgtttatgatagaatttggtttcctcttaattcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggag |
400 |
Q |
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| T |
34437413 |
ggtagatatcaagatgatgtttatgatagaatttggtttcctcttaaatcctcttcatggaaatctataagcacttcttcaaaaatagatgttagtggag |
34437512 |
T |
|
| Q |
401 |
atggctataaaccaccatttgaagttattaggaatgctgctacaccaaggaatgagaatgatagtttggaattttcttggatttcagatgatccaaattt |
500 |
Q |
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| T |
34437513 |
atggctataaaccaccatttgaagttattaggaatgctgctacaccaaggaatgagaatgatagtttggaattttcttggatttcagatgatcgaaattt |
34437612 |
T |
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| Q |
501 |
gaaattcaatatctacttgtactttgcagaagtggagaaacttaacaaaactcaattgagagaattcaacgtatcttggaatggttctcctttg |
594 |
Q |
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| T |
34437613 |
gaaattcaatgtctacttgtactttgcagaagtggagaaacttaacaaaactcagttgagagaattcgacgtatcttggaatggttctcctttg |
34437706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 34443860 - 34444453
Alignment:
| Q |
1 |
ttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtcatcagtgaaatttaagaatgcttcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |
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| T |
34443860 |
ttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttatggtcaacagttaaatttaagaatgcttcag |
34443959 |
T |
|
| Q |
101 |
aacaagttgcattggaaataatcagcatggcaacatcagaagaaacaaatgtgtgccttgtgaataaaggaaaaggaattccttttatctcagcattgga |
200 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
34443960 |
aaggagttacattggaaataatcagcatggcaacatcagaagaaacaaatgtttgccttgtgaataaaggaaaaggaattccttttatctccgcgttgga |
34444059 |
T |
|
| Q |
201 |
acttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagatgggacattggttcatttaatggaagt |
300 |
Q |
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| T |
34444060 |
acttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattggttcatttaatggaagt |
34444159 |
T |
|
| Q |
301 |
ggtagatatcaagatgatgtttatgatagaatttggtttcctcttaattcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggag |
400 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444160 |
ggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggag |
34444259 |
T |
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| Q |
401 |
atggctataaaccaccatttgaagttattaggaatgctgctacaccaaggaatgagaatgatagtttggaattttcttggatttcagatgatccaaattt |
500 |
Q |
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||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
34444260 |
atggctataaagcaccgtttgaagttattagcaatgctgctacaccaaggaatgagaatgttagtttggatttttcttggatttcagatgatccaaattt |
34444359 |
T |
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| Q |
501 |
gaaattcaatatctacttgtactttgcagaagtggagaaacttaacaaaactcaattgagagaattcaacgtatcttggaatggttctcctttg |
594 |
Q |
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|||||||||| |||||||||||||||| ||| | |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
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| T |
34444360 |
gaaattcaatgtctacttgtactttgctgaatttgagaaacttaacaaaactcagttgagaaaattcaatgtatcttggaatggttctcctttg |
34444453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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