View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1472_high_13 (Length: 279)
Name: NF1472_high_13
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_high_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 13077526 - 13077282
Alignment:
| Q |
18 |
gaaactccattgagagaacatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttgaaaaacctccaagnnnnnnng |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13077526 |
gaaactccattgagagaacatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttgaaaaacctccaagaaaaaaag |
13077427 |
T |
|
| Q |
118 |
ttgaaaggaaagaggctcatgaatttacaaggccaaaaaacatgagcaatgaaattccaaaagtagaagaagtacaagaagacaaagaggtggaaaggca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13077426 |
ttgaaaggaaagaggctcatgaatttacaaggccaaaaatcatgagcagtgaaattccaaaagtagaagaagtacaagaagacaaagaggtggaaaggca |
13077327 |
T |
|
| Q |
218 |
cattcatttaccagaagcaagcatatctaaagaagaaagaacaca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13077326 |
cattcatttaccagaagcaagcatatctaaagaagaaagaacaca |
13077282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 13073322 - 13073078
Alignment:
| Q |
18 |
gaaactccattgagagaacatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttgaaaaacctccaagnnnnnnng |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
13073322 |
gaaactccattgagagaacatcaaagataaccagaagaattcacttttaaaattgagttggattcatctactacatttgaaaaacctccaagaaaaaaag |
13073223 |
T |
|
| Q |
118 |
ttgaaaggaaagaggctcatgaatttacaaggccaaaaaacatgagcaatgaaattccaaaagtagaagaagtacaagaagacaaagaggtggaaaggca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13073222 |
ttgaaaggaaagaggctcatgaatttacaaggccattaatcattagcattgaaattccaaaagtagaagaagtacaagaagacaaagaggtggaaaggca |
13073123 |
T |
|
| Q |
218 |
cattcatttaccagaagcaagcatatctaaagaagaaagaacaca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13073122 |
cattcatttaccagaagcaagcatatctaaagaagaaagaacaca |
13073078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University