View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1472_high_2 (Length: 548)

Name: NF1472_high_2
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1472_high_2
NF1472_high_2
[»] chr7 (15 HSPs)
chr7 (139-532)||(25187386-25187779)
chr7 (5-58)||(9778511-9778564)
chr7 (5-49)||(3991335-3991379)
chr7 (5-58)||(7438717-7438770)
chr7 (5-58)||(24339653-24339706)
chr7 (5-58)||(26033456-26033509)
chr7 (5-49)||(11061080-11061124)
chr7 (11-58)||(18039016-18039063)
chr7 (5-112)||(5409771-5409884)
chr7 (5-47)||(13770702-13770744)
chr7 (11-49)||(21560520-21560558)
chr7 (5-58)||(11665435-11665488)
chr7 (5-49)||(9408338-9408382)
chr7 (5-45)||(25481913-25481953)
chr7 (5-49)||(33994223-33994267)
[»] chr1 (19 HSPs)
chr1 (11-112)||(18471317-18471414)
chr1 (5-58)||(47989508-47989561)
chr1 (11-58)||(31694705-31694752)
chr1 (5-110)||(1486646-1486757)
chr1 (5-49)||(18337340-18337384)
chr1 (5-49)||(24577190-24577234)
chr1 (5-49)||(40258937-40258981)
chr1 (5-114)||(1704933-1705040)
chr1 (7-49)||(1815270-1815312)
chr1 (5-59)||(6612165-6612219)
chr1 (11-49)||(51410042-51410080)
chr1 (5-58)||(113310-113363)
chr1 (5-46)||(32434723-32434764)
chr1 (5-113)||(38078600-38078709)
chr1 (11-59)||(5944300-5944348)
chr1 (5-49)||(19058860-19058904)
chr1 (5-49)||(22515891-22515935)
chr1 (5-49)||(22881620-22881664)
chr1 (5-49)||(42359453-42359497)
[»] chr3 (21 HSPs)
chr3 (5-52)||(21256987-21257034)
chr3 (12-49)||(3865692-3865729)
chr3 (12-49)||(8593155-8593192)
chr3 (5-49)||(26508121-26508165)
chr3 (5-49)||(28918012-28918056)
chr3 (5-49)||(39756247-39756291)
chr3 (5-48)||(35312065-35312108)
chr3 (5-46)||(11610532-11610573)
chr3 (5-46)||(14209124-14209165)
chr3 (5-58)||(49651781-49651834)
chr3 (5-49)||(1509550-1509594)
chr3 (5-45)||(4987299-4987339)
chr3 (5-49)||(8587025-8587069)
chr3 (5-49)||(10954963-10955007)
chr3 (5-49)||(16000020-16000064)
chr3 (5-49)||(20503476-20503520)
chr3 (14-58)||(22774065-22774109)
chr3 (5-49)||(34185127-34185171)
chr3 (5-49)||(34910328-34910372)
chr3 (5-49)||(51206357-51206401)
chr3 (5-49)||(55401086-55401130)
[»] chr2 (11 HSPs)
chr2 (18-114)||(29367281-29367379)
chr2 (5-49)||(2438723-2438767)
chr2 (5-49)||(18421974-18422018)
chr2 (5-52)||(6940266-6940313)
chr2 (5-48)||(30404855-30404898)
chr2 (7-46)||(33153437-33153476)
chr2 (11-49)||(19536401-19536439)
chr2 (5-47)||(20473333-20473375)
chr2 (5-47)||(30717536-30717578)
chr2 (7-49)||(38442320-38442362)
chr2 (20-56)||(11223860-11223896)
[»] chr5 (17 HSPs)
chr5 (12-58)||(21351900-21351946)
chr5 (5-51)||(7218269-7218315)
chr5 (5-49)||(6247633-6247677)
chr5 (5-49)||(21191060-21191104)
chr5 (5-49)||(33178036-33178080)
chr5 (10-49)||(12199946-12199985)
chr5 (5-52)||(24906302-24906349)
chr5 (69-112)||(27932311-27932354)
chr5 (11-49)||(15382496-15382534)
chr5 (11-49)||(15884005-15884043)
chr5 (5-47)||(21576751-21576793)
chr5 (5-58)||(21542041-21542094)
chr5 (5-46)||(39698552-39698593)
chr5 (5-49)||(10298580-10298624)
chr5 (5-49)||(13287403-13287447)
chr5 (5-53)||(22299481-22299528)
chr5 (5-49)||(42893371-42893415)
[»] chr6 (17 HSPs)
chr6 (5-49)||(9522902-9522946)
chr6 (11-49)||(4877960-4877998)
chr6 (11-112)||(24645498-24645600)
chr6 (5-58)||(16766708-16766761)
chr6 (5-49)||(10770678-10770722)
chr6 (5-112)||(28715306-28715414)
chr6 (5-49)||(34595145-34595189)
chr6 (5-105)||(7930316-7930413)
chr6 (5-58)||(9107365-9107418)
chr6 (5-49)||(9911532-9911577)
chr6 (5-46)||(31384931-31384972)
chr6 (5-49)||(1700363-1700407)
chr6 (5-49)||(7801160-7801204)
chr6 (5-49)||(7977834-7977878)
chr6 (5-49)||(16833319-16833363)
chr6 (5-57)||(18252747-18252799)
chr6 (13-49)||(28152117-28152153)
[»] chr4 (11 HSPs)
chr4 (5-49)||(23292990-23293034)
chr4 (5-49)||(29205455-29205499)
chr4 (11-116)||(42640546-42640647)
chr4 (8-57)||(28000738-28000787)
chr4 (5-46)||(28964255-28964296)
chr4 (5-49)||(6485615-6485659)
chr4 (5-45)||(11596360-11596400)
chr4 (13-49)||(12797342-12797378)
chr4 (5-49)||(21945514-21945558)
chr4 (5-45)||(27706185-27706225)
chr4 (5-49)||(54580027-54580071)
[»] chr8 (11 HSPs)
chr8 (5-112)||(8342983-8343086)
chr8 (5-58)||(22651987-22652040)
chr8 (5-49)||(4948663-4948707)
chr8 (5-49)||(25192351-25192395)
chr8 (5-49)||(25566852-25566896)
chr8 (5-49)||(29510308-29510352)
chr8 (5-47)||(18407730-18407772)
chr8 (5-49)||(2572060-2572104)
chr8 (5-49)||(20873080-20873124)
chr8 (5-45)||(22596005-22596045)
chr8 (5-49)||(40332202-40332246)
[»] scaffold0136 (1 HSPs)
scaffold0136 (5-46)||(3856-3897)
[»] scaffold0025 (1 HSPs)
scaffold0025 (11-49)||(23787-23825)
[»] scaffold0223 (1 HSPs)
scaffold0223 (5-46)||(20183-20224)
[»] scaffold0021 (1 HSPs)
scaffold0021 (12-49)||(130500-130537)
[»] scaffold0652 (1 HSPs)
scaffold0652 (5-49)||(466-510)
[»] scaffold0103 (1 HSPs)
scaffold0103 (5-45)||(51822-51862)
[»] scaffold0027 (1 HSPs)
scaffold0027 (5-49)||(46693-46737)
[»] scaffold0011 (1 HSPs)
scaffold0011 (5-49)||(17753-17797)


Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 139 - 532
Target Start/End: Complemental strand, 25187779 - 25187386
Alignment:
Q  139 atactatcaatccaaacattcccttgagggtatatacatactctagttggaagagaatgaaaggcataggatgaattatttgaaactttagttgattggt 238  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25187779 atactatcaatccaaacattcccttgagggtatatacataccctagttggaagagaatgaaaggcataggatgaattatttgaaactttagttgattggt 25187680  T
Q  239 tcaatgtttttagaagcaaaatttctcttgaaccacttatagctcttttctaaacgtggggagattcgagaggaataatagcatatttgctttaaaattt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25187679 tcaatgtttttagaagcaaaatttctcttgaaccacttatagctcttttctaaacgtggggagattcgagaggaataatagcatatttgctttaaaattt 25187580  T
Q  339 atccttaaatattcttttattttatgttagcttaattttaaaatgctaaaaacagttattaatatttcttctccattaggattttctcctcgattcgtca 438  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25187579 atccttaaatattcttttattttatgttagattaattttaaaatgctaaaaacagttattaatatttcttctccattaggattttctcctcgattcgtca 25187480  T
Q  439 aaccaaacatgtatgaaatcactctcttttgcccctccattaagcttcctctacacaattgaaccaaacagtacctaagtgtgtgttcatggat 532  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25187479 aaccaaacatgtatgacatcactctcttttgcccctccattaagcttcctctacacaattgaaccaaacagtacctaagtgtgtgttcatggat 25187386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 9778511 - 9778564
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| || |||||    
T  9778511 taatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcgtgtcg 9778564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 3991335 - 3991379
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  3991335 taatttgaaaaaatcacataattcagtataattacaagtgtcggt 3991379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 7438717 - 7438770
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||| | ||||||||||||||||| ||||||||    
T  7438717 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcg 7438770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 24339653 - 24339706
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||| || |||||    
T  24339653 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcg 24339706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 26033509 - 26033456
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||| || |||||    
T  26033509 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtctcgtgtcg 26033456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 11061124 - 11061080
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||    
T  11061124 taatttgaaaaaatcacataatttagtataattacaagtgtcggt 11061080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 18039016 - 18039063
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| |||||||||||||| ||||||||||||||||| || |||||    
T  18039016 aaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcg 18039063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 5409884 - 5409771
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgt------cgacatgtgttcgacaccataacacccctaattcgaggagtg 98  Q
    |||||| ||||| ||||||||||||||  |||||||||||||||| || |||      ||||| |||| |||||||   |||| |||||| |||||||||    
T  5409884 taatttgaaaaaatcacataattcagtgcaattacaagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtg 5409785  T
Q  99 tttgtgcttcatag 112  Q
    |  |||||||||||    
T  5409784 tccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 13770702 - 13770744
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcg 47  Q
    |||||||||||| | |||||||||||| |||||||||||||||    
T  13770702 taatttaaaaaaattacataattcagtgtaattacaagtgtcg 13770744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 21560520 - 21560558
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  21560520 aaaaaaatcacataattcagtgtaattacaagtgtcggt 21560558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 11665488 - 11665435
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||||| |||||| |||||||| | ||||||||    
T  11665488 taatttgaaaaaatcacataattcagtctaattataagtgtcgatgtcatgtcg 11665435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 9408382 - 9408338
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  9408382 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 9408338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 25481913 - 25481953
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgt 45  Q
    |||||| ||||| |||||||||||||| |||||||||||||    
T  25481913 taatttgaaaaaatcacataattcagtgtaattacaagtgt 25481953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 33994223 - 33994267
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| |||| |||||||||||||||  ||||||||||||||||    
T  33994223 taatttgaaaaggtcacataattcagtgcaattacaagtgtcggt 33994267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 18471317 - 18471414
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcgacatgtgttcgacaccataacacccctaattcgaggagtgtttgtgcttcat 110  Q
    |||||| ||||||||||||||||||||||||||||||||| ||   ||||| |||| |||||||  ||||| |||||||||||||||||  || ||||||    
T  18471317 aaaaaaatcacataattcagtataattacaagtgtcggta-ca---cgacacgtgtccgacaccgaaacacacctaattcgaggagtgtccgtacttcat 18471412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 47989508 - 47989561
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| || |||||    
T  47989508 taatttaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcg 47989561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 31694752 - 31694705
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| |||||||||||||||||||||||||||||||| || |||||    
T  31694752 aaaaaaatcacataattcagtataattacaagtgtcggtgtcgtgtcg 31694705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 1486757 - 1486646
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgt------cgacatgtgttcgacaccataacacccctaattcgaggagtg 98  Q
    |||||| ||||| |||||||||||||| |||||| |||||||||| || |||      ||||| |||| |||||||   |||| |||||| |||||||||    
T  1486757 taatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtg 1486658  T
Q  99 tttgtgcttcat 110  Q
    | ||||||||||    
T  1486657 tctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 18337340 - 18337384
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  18337340 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 18337384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 24577234 - 24577190
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  24577234 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 24577190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 40258981 - 40258937
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  40258981 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 40258937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 1705040 - 1704933
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcgacatgtgttcgacaccataacacccctaattcgaggagtgtttgtg 104  Q
    |||||| ||||| |||||||||||||  ||||||||||||||||| || |||| ||  |||| |||||||   |||| |||||| | ||||||||   ||    
T  1705040 taatttgaaaaaatcacataattcagggtaattacaagtgtcggtgtcgtgtcaac--gtgtccgacaccgagacacgcctaatccaaggagtgtccatg 1704943  T
Q  105 cttcatagat 114  Q
    ||||||||||    
T  1704942 cttcatagat 1704933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 1815270 - 1815312
Alignment:
Q  7 atttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||| ||||| |||||||||||||| |||||||||||||||||    
T  1815270 attttaaaaaatcacataattcagtgtaattacaagtgtcggt 1815312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 6612219 - 6612165
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcga 59  Q
    |||||| ||||| | |||||||||||| ||||||||||||||||| || ||||||    
T  6612219 taatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcga 6612165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 51410042 - 51410080
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  51410042 aaaaaaatcacataattcagtgtaattacaagtgtcggt 51410080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 113310 - 113363
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||||| ||||||||||||| ||| || |||||    
T  113310 taatttgaaaaaatcacataattcagtgtaattacaagtgtaggtgtcgtgtcg 113363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 32434764 - 32434723
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||| |||||||||||||||||| | ||||||||||||||    
T  32434764 taatttgaaaaagtcacataattcattgtaattacaagtgtc 32434723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 38078709 - 38078600
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatc-atgtcgacatgtgttcgacaccataacacccctaattcgaggagtgtttgt 103  Q
    |||||| ||||| |||||||||||| | ||||||||||||||||| ||     |||||  ||||| ||||||  |||| |||||| |||||||| || ||    
T  38078709 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgt 38078610  T
Q  104 gcttcataga 113  Q
    ||||||||||    
T  38078609 gcttcataga 38078600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 5944300 - 5944348
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcga 59  Q
    |||||| |||||||||||||| |||||| |||||||||| || ||||||    
T  5944300 aaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcga 5944348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 19058904 - 19058860
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||||  | |||||||||||| |||||||||||||||||    
T  19058904 taatttaaaaagataacataattcagtgtaattacaagtgtcggt 19058860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 22515935 - 22515891
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  22515935 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 22515891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 22881664 - 22881620
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  22881664 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 22881620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 42359497 - 42359453
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||    
T  42359497 taatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggt 42359453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 21257034 - 21256987
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatc 52  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  21257034 taatttgaaaaaatcacataattcagtataattacaagtgtcggtatc 21256987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 3865692 - 3865729
Alignment:
Q  12 aaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3865692 aaaaactcacataattcagtataattacaagtgtcggt 3865729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 8593155 - 8593192
Alignment:
Q  12 aaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  8593155 aaaaaatcacataattcagtataattacaagtgtcggt 8593192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 26508121 - 26508165
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  26508121 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 26508165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 28918012 - 28918056
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  28918012 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 28918056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 39756247 - 39756291
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||||| |||||||||| | |||||||||||||||||||    
T  39756247 taatttaaaaaaatcacataatttaatataattacaagtgtcggt 39756291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 35312065 - 35312108
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcgg 48  Q
    ||||||||||| || |||||||||||| ||||||||||||||||    
T  35312065 taatttaaaaatgttacataattcagtgtaattacaagtgtcgg 35312108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 11610532 - 11610573
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||||||||| |||||||||||||| || |||||||||||    
T  11610532 taatttaaaaaaatcacataattcagtgtagttacaagtgtc 11610573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 14209124 - 14209165
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||| ||||| |||||||||||||| ||||||||||||||    
T  14209124 taattttaaaaaatcacataattcagtgtaattacaagtgtc 14209165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 49651834 - 49651781
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||| | ||||||||||||||||| || |||||    
T  49651834 taatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgtcg 49651781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 1509550 - 1509594
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  1509550 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 1509594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4987339 - 4987299
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgt 45  Q
    |||||| ||||| |||||||||||||| |||||||||||||    
T  4987339 taatttgaaaaaatcacataattcagtgtaattacaagtgt 4987299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 8587069 - 8587025
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  8587069 taatttgaaaaaatcacataattaagtgtaattacaagtgtcggt 8587025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 10954963 - 10955007
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||| ||||||||||||    
T  10954963 taatttgaaaaaatcacataattcagtgtaatcacaagtgtcggt 10955007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 16000064 - 16000020
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||||| | |||||||||||| ||| |||||||||||||    
T  16000064 taatttaaaaaaataacataattcagtgtaactacaagtgtcggt 16000020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 20503476 - 20503520
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| | |||||||||||| |||||||||||||||||    
T  20503476 taatttgaaaaaatgacataattcagtgtaattacaagtgtcggt 20503520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 22774109 - 22774065
Alignment:
Q  14 aaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    ||||||||||| |||||| |||||| |||||||||| ||||||||    
T  22774109 aaagtcacatatttcagtgtaattataagtgtcggtgtcatgtcg 22774065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 34185171 - 34185127
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||    
T  34185171 taatttcaaaaaatcacacaattcagtgtaattacaagtgtcggt 34185127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 34910328 - 34910372
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||| ||||||    
T  34910328 taatttgaaaaaatcacataattcagtgtaattacaagagtcggt 34910372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 51206401 - 51206357
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| ||| |||||||||||||    
T  51206401 taatttgaaaaaatcacataattcagtgtaaatacaagtgtcggt 51206357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 55401086 - 55401130
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  55401086 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 55401130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 29367379 - 29367281
Alignment:
Q  18 tcacataattcagtataattacaagtgtcggtatcatgtcg--acatgtgttcgacaccataacacccctaattcgaggagtgtttgtgcttcatagat 114  Q
    |||||||||| ||| ||||||||| |||||||||| |||||  |||||||| |||||||   |||  |||||| |||||| ||||||||||||||||||    
T  29367379 tcacataatttagtgtaattacaaatgtcggtatcgtgtcggtacatgtgtccgacaccgagacatgcctaatccgaggaatgtttgtgcttcatagat 29367281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 2438767 - 2438723
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  2438767 taatttcaaaaaatcacataattcagtgtaattacaagtgtcggt 2438723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 18421974 - 18422018
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||||  |||||||||||||| |||||||||||||||||    
T  18421974 taatttaaaaatatcacataattcagtgtaattacaagtgtcggt 18422018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 6940266 - 6940313
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatc 52  Q
    |||||| ||||||| |||||||| ||| ||||||||||||||||||||    
T  6940266 taattttaaaaagttacataattaagtgtaattacaagtgtcggtatc 6940313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 30404898 - 30404855
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcgg 48  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||    
T  30404898 taatttgaaaaaatcacataattcagtgtaattacaagtgtcgg 30404855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 33153437 - 33153476
Alignment:
Q  7 atttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  33153437 atttaaaaaaatcacataattcagtgtaattacaagtgtc 33153476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 19536439 - 19536401
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  19536439 aaaaaaatcacataattcagtgtaattacaagtgtcggt 19536401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 20473333 - 20473375
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcg 47  Q
    |||||||||||| ||| |||||||||| |||||||||||||||    
T  20473333 taatttaaaaaactcatataattcagtgtaattacaagtgtcg 20473375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 30717578 - 30717536
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcg 47  Q
    |||||| ||||| |||||||||||||| |||||||||||||||    
T  30717578 taatttgaaaaaatcacataattcagtgtaattacaagtgtcg 30717536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 38442320 - 38442362
Alignment:
Q  7 atttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||| |||||||||||| |||||||| ||||||||||    
T  38442320 atttaaaaaaatcacataattcaatataattataagtgtcggt 38442362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 11223896 - 11223860
Alignment:
Q  20 acataattcagtataattacaagtgtcggtatcatgt 56  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  11223896 acataattcagtgtaattacaagtgtcggtgtcatgt 11223860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21351946 - 21351900
Alignment:
Q  12 aaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  21351946 aaaaagtcacataattcagtgtaattacaagtgtcggtgtcatgtcg 21351900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 7218315 - 7218269
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtat 51  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||    
T  7218315 taatttaaataaatcacataattcagtgtaattacaagtgtcggtat 7218269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 6247633 - 6247677
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  6247633 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 6247677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 21191104 - 21191060
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  21191104 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 21191060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 33178036 - 33178080
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||    
T  33178036 taatttaaaaaaatcacataatttagtgtaattacaagtgtcggt 33178080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 12199946 - 12199985
Alignment:
Q  10 taaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  12199946 taaaaaaatcacataattcagtacaattacaagtgtcggt 12199985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 24906349 - 24906302
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatc 52  Q
    |||||| ||||| | |||||||||||| ||||||||||||||||||||    
T  24906349 taatttgaaaaaatgacataattcagtgtaattacaagtgtcggtatc 24906302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 27932311 - 27932354
Alignment:
Q  69 gacaccataacacccctaattcgaggagtgtttgtgcttcatag 112  Q
    |||||||  |||| ||||||||||||||||||||||||||||||    
T  27932311 gacaccaggacacgcctaattcgaggagtgtttgtgcttcatag 27932354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 15382496 - 15382534
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  15382496 aaaaaaatcatataattcagtataattacaagtgtcggt 15382534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 15884005 - 15884043
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  15884005 aaaaaaatcacataattcagtgtaattacaagtgtcggt 15884043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 21576793 - 21576751
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcg 47  Q
    |||||| ||||| |||||||||||||| |||||||||||||||    
T  21576793 taatttgaaaaaatcacataattcagtgtaattacaagtgtcg 21576751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 21542041 - 21542094
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||||||||  | |||||||||||| ||||||||||||||||| || |||||    
T  21542041 taatttaaaaagataacataattcagtgtaattacaagtgtcggtgtcgtgtcg 21542094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 39698552 - 39698593
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||| ||||| |||||||||||||| ||||||||||||||    
T  39698552 taatttgaaaaaatcacataattcagtgtaattacaagtgtc 39698593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 10298580 - 10298624
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||||||||||||| || | |||||||||||||||||    
T  10298580 taatttgaaaaagtcacataatacaatgtaattacaagtgtcggt 10298624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 13287447 - 13287403
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| ||| |||||||||||||    
T  13287447 taatttgaaaaaatcacataattcagtgtaactacaagtgtcggt 13287403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 22299528 - 22299481
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatca 53  Q
    |||||||||||| |||||| |||||||||||||||||| ||| ||||||    
T  22299528 taatttaaaaaa-tcacatgattcagtataattacaagggtcagtatca 22299481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 42893371 - 42893415
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| ||||||||| |||| |||||||||||||||||    
T  42893371 taatttgaaaaaatcacataatccagtgtaattacaagtgtcggt 42893415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 9522902 - 9522946
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||||| |||||||||||||| |||||||||||||||||    
T  9522902 taatttaaaaaaatcacataattcagtgtaattacaagtgtcggt 9522946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 4877960 - 4877998
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  4877960 aaaaaagtcacataattaagtataattacaagtgtcggt 4877998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 24645498 - 24645600
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggtatca-tgtcgacatgtgttcgacaccataacacccctaattcgaggagtgtttgtgcttca 109  Q
    |||||| ||||||||||||||||| |||||||||||||| |||    ||||| |||| ||||||||  ||||  ||||| ||| |||||| |||||||||    
T  24645498 aaaaaaatcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttca 24645597  T
Q  110 tag 112  Q
    |||    
T  24645598 tag 24645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 16766708 - 16766761
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||| || |||||    
T  16766708 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcg 16766761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 10770722 - 10770678
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  10770722 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 10770678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 28715306 - 28715414
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatc-atgtcgacatgtgttcgacaccataacacccctaattcgaggagtgtttgt 103  Q
    |||||| ||||| | |||||||||||| ||||||||||||||||| ||     ||||| ||||||||||||   |||| ||||||||||| |||||  ||    
T  28715306 taatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgt 28715405  T
Q  104 gcttcatag 112  Q
    |||||||||    
T  28715406 gcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 34595145 - 34595189
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  34595145 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 34595189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 7930316 - 7930413
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcgacatgtgttcgacaccataacacccctaattcgaggagtgtttgtg 104  Q
    |||||| ||||| |||||||||| |||  |||| ||||||||||| || ||||   | |||| ||||||||  |||| |||||||||||||||||| |||    
T  7930316 taatttgaaaaaatcacataatttagtgaaatttcaagtgtcggtgtcgtgtc---acgtgtccgacaccaggacacgcctaattcgaggagtgttcgtg 7930412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 9107418 - 9107365
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| ||||| |||||||| ||||||||||||||||| || |||||    
T  9107418 taatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcg 9107365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 9911577 - 9911532
Alignment:
Q  5 taatttaaaa-aagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||| || |||||||||||||| |||||||||||||||||    
T  9911577 taatttaaaagaaatcacataattcagtgtaattacaagtgtcggt 9911532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 31384931 - 31384972
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||| ||||| |||||||||||||| ||||||||||||||    
T  31384931 taatttgaaaaaatcacataattcagtgtaattacaagtgtc 31384972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 1700363 - 1700407
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||||||||| ||||||| |||||| |||||| ||||||||||    
T  1700363 taatttaaaaaaatcacatatttcagtgtaattataagtgtcggt 1700407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 7801204 - 7801160
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||  |||||||||||||||||    
T  7801204 taatttgaaaaaatcacataattcagcgtaattacaagtgtcggt 7801160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 7977878 - 7977834
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| | |||||||||||| |||||||||||||||||    
T  7977878 taatttgaaaaaattacataattcagtgtaattacaagtgtcggt 7977834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 16833319 - 16833363
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| ||||||| |||||| |||||||||||||||||    
T  16833319 taatttgaaaaaatcacatacttcagtgtaattacaagtgtcggt 16833363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 18252799 - 18252747
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtc 57  Q
    |||||||||||| | |||||||| ||| |||||||| ||||||||||| ||||    
T  18252799 taatttaaaaaaatgacataatttagtgtaattacaggtgtcggtatcgtgtc 18252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 28152117 - 28152153
Alignment:
Q  13 aaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||| |||||||||||||| |||||||||||||||||    
T  28152117 aaaaatcacataattcagtgtaattacaagtgtcggt 28152153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 23293034 - 23292990
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  23293034 taatttgaaaaaatcacataattcagtataattacaagtgtcggt 23292990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 29205455 - 29205499
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  29205455 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 29205499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 42640546 - 42640647
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcgacatgtgttcgacaccataacacccctaattcgaggagtgtttgtgcttcat 110  Q
    |||||| |||||||||||||| ||||||||||||||||| ||     |||| |||| || |||||  |||| |||||| |||||||| |  |||||||||    
T  42640546 aaaaaaatcacataattcagtgtaattacaagtgtcggtgtc----ggacacgtgtccggcaccaggacacgcctaatccgaggagtttccgtgcttcat 42640641  T
Q  111 agatct 116  Q
    ||||||    
T  42640642 agatct 42640647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 28000787 - 28000738
Alignment:
Q  8 tttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtc 57  Q
    ||||||| | ||| |||||||||| ||||||||||||||||| |||||||    
T  28000787 tttaaaataatcatataattcagtgtaattacaagtgtcggtgtcatgtc 28000738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 28964296 - 28964255
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||| ||||| |||||||||||||| ||||||||||||||    
T  28964296 taatttgaaaaaatcacataattcagtgtaattacaagtgtc 28964255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 6485659 - 6485615
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  6485659 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 6485615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 11596400 - 11596360
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgt 45  Q
    |||||| ||||| |||||||||||||| |||||||||||||    
T  11596400 taatttgaaaaaatcacataattcagtgtaattacaagtgt 11596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 12797378 - 12797342
Alignment:
Q  13 aaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||| |||||||||||||| |||||||||||||||||    
T  12797378 aaaaatcacataattcagtgtaattacaagtgtcggt 12797342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 21945514 - 21945558
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| | |||||||||||| |||||||||||||||||    
T  21945514 taatttgaaaaaatgacataattcagtgtaattacaagtgtcggt 21945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 27706225 - 27706185
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgt 45  Q
    |||||||||||| |||||||||| ||| |||||||||||||    
T  27706225 taatttaaaaaaatcacataatttagtgtaattacaagtgt 27706185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 54580071 - 54580027
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||| ||||||||||    
T  54580071 taatttgaaaaaatcacataattcagtgtaattataagtgtcggt 54580027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 8342983 - 8343086
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcgacatgtgttcgacaccataacacccctaattcgaggagtgtttgtg 104  Q
    |||||| ||||| |||||||||| ||| ||||||||||||||||| || |    |||||||| |||||||   |||| |||||| ||| |||||| ||||    
T  8342983 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgt----acatgtgtccgacaccgggacacgcctaatccgaagagtgtctgtg 8343078  T
Q  105 cttcatag 112  Q
    ||||||||    
T  8343079 cttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 22651987 - 22652040
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggtatcatgtcg 58  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||| || |||||    
T  22651987 taatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcg 22652040  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4948663 - 4948707
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  4948663 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 4948707  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 25192395 - 25192351
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||    
T  25192395 taatttgaaaaagtgacataattcagtataattataagtgtcggt 25192351  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 25566852 - 25566896
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  25566852 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 25566896  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 29510352 - 29510308
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||||    
T  29510352 taatttgaaaaaatcacaaaattcagtataattacaagtgtcggt 29510308  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 18407730 - 18407772
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcg 47  Q
    ||||| |||||| |||||||||||||| |||||||||||||||    
T  18407730 taattcaaaaaaatcacataattcagtgtaattacaagtgtcg 18407772  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 2572104 - 2572060
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  2572104 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 2572060  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 20873080 - 20873124
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  20873080 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 20873124  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 22596005 - 22596045
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgt 45  Q
    |||||||||||| | |||||||||||| |||||||||||||    
T  22596005 taatttaaaaaaataacataattcagtgtaattacaagtgt 22596045  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 40332202 - 40332246
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| | ||| |||||||||||||| |||||||||||||||||    
T  40332202 taatttgagaaaatcacataattcagtgtaattacaagtgtcggt 40332246  T

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Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 3897 - 3856
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||||||||| |||||||||||||| ||||||||||||||    
T  3897 taatttaaaaaaatcacataattcagtgtaattacaagtgtc 3856  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 23787 - 23825
Alignment:
Q  11 aaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  23787 aaaaaaatcacataattcagtgtaattacaagtgtcggt 23825  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 20183 - 20224
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtc 46  Q
    |||||| ||||| |||||||||||||| ||||||||||||||    
T  20183 taatttgaaaaaatcacataattcagtgtaattacaagtgtc 20224  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 130500 - 130537
Alignment:
Q  12 aaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  130500 aaaaaatcacataattcagtgtaattacaagtgtcggt 130537  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 510 - 466
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||    
T  510 taatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggt 466  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 51822 - 51862
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgt 45  Q
    |||||| ||||| |||||||||||||| |||||||||||||    
T  51822 taatttgaaaaaatcacataattcagtgtaattacaagtgt 51862  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 46693 - 46737
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||||||| ||||||||| |||||||    
T  46693 taatttgaaaaaatcacataattcagtgtaattacaaatgtcggt 46737  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 17797 - 17753
Alignment:
Q  5 taatttaaaaaagtcacataattcagtataattacaagtgtcggt 49  Q
    |||||| ||||| |||||||||| ||| |||||||||||||||||    
T  17797 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggt 17753  T

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