View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_high_20 (Length: 237)
Name: NF1472_high_20
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 23507371 - 23507178
Alignment:
| Q |
33 |
cccttttatatatacaacactatgttgactctcttaacagcaactccatcttcaattcccactttccctttctaaacctttttccattctctccaacaca |
132 |
Q |
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| T |
23507371 |
cccttttatatatacaacactatgttgactctcttaacagcaactccatcttcaattcccactttccctttctaaacctttttccattctctccaacaca |
23507272 |
T |
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| Q |
133 |
tacatatatatgtttacaactaacaactctatctactcacacccttcctcttcctccctctcacatatcattgacgaattcagagggctttcat |
226 |
Q |
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| T |
23507271 |
tacatatatatgtttacaactaacaactctatctactcacacccttcctcttcctccctctcacatatcattgacgaattcagagggctttcat |
23507178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 23247904 - 23247850
Alignment:
| Q |
85 |
caattcccactttccctttctaaacctttttccattctctccaacacatacatat |
139 |
Q |
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||||||||||||| ||| || ||||| ||||||| ||| |||||||||||||||| |
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| T |
23247904 |
caattcccactttacctctcaaaaccattttccactctatccaacacatacatat |
23247850 |
T |
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