View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1472_high_4 (Length: 380)

Name: NF1472_high_4
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1472_high_4
NF1472_high_4
[»] chr2 (6 HSPs)
chr2 (42-364)||(32445137-32445463)
chr2 (200-316)||(32438445-32438561)
chr2 (119-158)||(28037314-28037353)
chr2 (48-138)||(11985087-11985177)
chr2 (78-156)||(27477336-27477414)
chr2 (104-160)||(9374374-9374430)
[»] chr5 (2 HSPs)
chr5 (26-153)||(11192502-11192629)
chr5 (31-136)||(28235723-28235831)
[»] chr3 (1 HSPs)
chr3 (26-130)||(30293348-30293451)
[»] chr7 (1 HSPs)
chr7 (31-161)||(3861076-3861206)
[»] chr1 (2 HSPs)
chr1 (78-158)||(6017709-6017789)
chr1 (116-158)||(799665-799707)
[»] chr6 (1 HSPs)
chr6 (119-174)||(25337790-25337845)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 42 - 364
Target Start/End: Complemental strand, 32445463 - 32445137
Alignment:
Q  42 ctttaattttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatcatttacatttttaata 141  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||| |||||||||||||||||||| ||||||| |    
T  32445463 ctttaattttatcttattatttgtaagagttttgcagttatatgttattaacttggatgtagtgagtttgttggcatattcatcatttacgtttttaaca 32445364  T
Q  142 atgttaaatgatgtactctacttgtttgaatgagttaacatg----gtaataaataaaataatctataataacgacatttggattccggtaaggaatata 237  Q
     ||||||    |||||||||||| ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32445363 gtgttaa----tgtactctacttatttgaatgagttaacatgttttgtaataaataaaataatctataataacgacatttggattccggtaaggaatata 32445268  T
Q  238 taaccgaacaaactgcacgttggttgaagccaattatagtatgcccatgtgaatttcttctttgttttctttttggaaa----gnnnnnnnnccttgaca 333  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  32445267 taaccgaacaaactgcacgttagttgaagccaattatagtatgcccatgtgaatttcttctttgttttctttttggaaatagttttttttttccttgaca 32445168  T
Q  334 agattggaaatagttgctgtcatgtgattag 364  Q
    |||||||||||||||||||||||||||||||    
T  32445167 agattggaaatagttgctgtcatgtgattag 32445137  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 32438561 - 32438445
Alignment:
Q  200 tctataataacgacatttggattccggtaaggaatatataaccgaacaaactgcacgttggttgaagccaattatagtatgcccatgtgaatttcttctt 299  Q
    ||||||| ||||||| ||||||||||||| |||||||||| ||||| |||| ||| ||| |||| ||||| |||||| ||| |||||||| |||||||||    
T  32438561 tctataagaacgacagttggattccggtagggaatatatagccgaaaaaacagcatgttagttggagccatttatagcatgaccatgtgattttcttctt 32438462  T
Q  300 tgttttctttttggaaa 316  Q
    |||||||||||||||||    
T  32438461 tgttttctttttggaaa 32438445  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 28037314 - 28037353
Alignment:
Q  119 attcatcatttacatttttaataatgttaaatgatgtact 158  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  28037314 attcatcatttacatttttaacgatgttaaatgatgtact 28037353  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 11985177 - 11985087
Alignment:
Q  48 ttttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatcatttacattttta 138  Q
    ||||||| ||||||||||| |  |||||| ||| |||  ||||||||||||| |  ||||||| || ||| ||||||||||||| ||||||    
T  11985177 ttttatcatattatttgtaggcattttgctgttgtatcctattaacttggatgttgtgaatttgttcgcaaattcatcatttacgttttta 11985087  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 27477336 - 27477414
Alignment:
Q  78 gttatatattattaacttggatttaatgaattttttggcatattcatcatttacatttttaataatgttaaatgatgta 156  Q
    |||| ||| ||||||||||||| |  ||| | | || ||| ||||||||||||||||||||| |||||| |||||||||    
T  27477336 gttaaatactattaacttggatgttgtgagtatgttcgcagattcatcatttacatttttaacaatgttgaatgatgta 27477414  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 9374430 - 9374374
Alignment:
Q  104 tgaattttttggcatattcatcatttacatttttaataatgttaaatgatgtactct 160  Q
    |||||||||| ||||||||||||||||| ||||||    |||| |||||||||||||    
T  9374430 tgaattttttcgcatattcatcatttacgtttttagccgtgttgaatgatgtactct 9374374  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 11192502 - 11192629
Alignment:
Q  26 atgagtatttcgatccctttaattttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatc 125  Q
    ||||||||||||||| |||||| |||||| |||||||||||||  |||||  ||| ||| |||||||||| ||| |  | ||||| ||||||  || |||    
T  11192502 atgagtatttcgatcactttaaatttatcgtattatttgtaagcattttgtcgttgtatgttattaactttgatgttgtaaatttgttggcaggtttatc 11192601  T
Q  126 atttacatttttaataatgttaaatgat 153  Q
    |||||| |||||||  || |||||||||    
T  11192602 atttacgtttttaacgatattaaatgat 11192629  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 28235723 - 28235831
Alignment:
Q  31 tatttcgatccctttaattttatcttat-tatttgtaagagttttgcagttatatat--tattaacttggatttaatgaattttttggcatattcatcat 127  Q
    |||||||||| ||||||||||||| ||| | |||||| |  || ||| |||||||||  ||||||||||||| |  ||| ||| || ||| |||||||||    
T  28235723 tatttcgatcactttaattttatcatatatttttgtaggcattatgccgttatatatgctattaacttggatgttgtgagtttgttcgcagattcatcat 28235822  T
Q  128 ttacatttt 136  Q
    |||||||||    
T  28235823 ttacatttt 28235831  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 30293451 - 30293348
Alignment:
Q  26 atgagtatttcgatccctttaattttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatc 125  Q
    |||||||||||| || | |||| |||||| ||||||||||||| ||||||| |||||||  ||||||||||||| | |||| ||| || ||| |||||||    
T  30293451 atgagtatttcggtcacattaactttatcatattatttgtaagtgttttgc-gttatatgctattaacttggatgtcatgagtttatttgcagattcatc 30293353  T
Q  126 attta 130  Q
     ||||    
T  30293352 tttta 30293348  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 3861076 - 3861206
Alignment:
Q  31 tatttcgatccctttaattttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatcattta 130  Q
    ||||||| || ||||||||||||| |||||| |||| |  ||||||  |||||| |||| ||||||||| | |||| ||| ||  ||||||||| |||||    
T  3861076 tatttcggtcactttaattttatcatattatgtgtaggctttttgccattatatgttatcaacttggatgttatgagtttgttcacatattcataattta 3861175  T
Q  131 catttttaataatgttaaatgatgtactcta 161  Q
    | |||||| | ||||| ||||  ||||||||    
T  3861176 cgtttttagtgatgttgaatggggtactcta 3861206  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 6017709 - 6017789
Alignment:
Q  78 gttatatattattaacttggatttaatgaattttttggcatattcatcatttacatttttaataatgttaaatgatgtact 158  Q
    |||||||| ||||||||||||| |  ||||||| || ||| |||||||||||  ||||||||||| ||| || ||||||||    
T  6017709 gttatatactattaacttggatgttgtgaatttatttgcagattcatcatttttatttttaataacgttgaaagatgtact 6017789  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 799707 - 799665
Alignment:
Q  116 catattcatcatttacatttttaataatgttaaatgatgtact 158  Q
    |||||||||||||||| |||||||| ||||| |||||||||||    
T  799707 catattcatcatttacgtttttaatgatgttgaatgatgtact 799665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 25337790 - 25337845
Alignment:
Q  119 attcatcatttacatttttaataatgttaaatgatgtactctacttgtttgaatga 174  Q
    |||||||||||| ||||||| || ||||||||||||||||||| |  |||||||||    
T  25337790 attcatcatttatatttttagtagtgttaaatgatgtactctattaatttgaatga 25337845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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