View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_10 (Length: 382)
Name: NF1472_low_10
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 3014105 - 3014470
Alignment:
| Q |
1 |
ttgataacacaccattcagggtcttatatctatgtgatattgctattttggttgttgacattattcatgatgatggcttacagccgcatactatagactt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
3014105 |
ttgataacacaccattcaggggcttatatctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacacccacatactatagactt |
3014204 |
T |
|
| Q |
101 |
acgtgatctatgaaaaatcaccaacaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccatttcgt |
200 |
Q |
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|| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3014205 |
actcgatctattaaaactcaccaacaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccttttcgt |
3014304 |
T |
|
| Q |
201 |
aaagcattgttgcagcagtctaaggatgttcaagatgagtttcataccaggctctctaaggttgtttctcagttcaagacacacggactaaatactgact |
300 |
Q |
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| T |
3014305 |
aaagcattgttgcagcagtctaaggatgttcaagatgagtttcataccaggctctctaagtttgtttctcagttcaagacacacggactaaatactgact |
3014404 |
T |
|
| Q |
301 |
tgtattataaaaacgaaacaatcggaggacaaacattcagcattgtgcccacaagtgctacaaggt |
366 |
Q |
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| T |
3014405 |
tgtattataaaaacgaaacaatcggaggacaaacattcagcattgtgcccacaagtgctataaggt |
3014470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 29220057 - 29220009
Alignment:
| Q |
170 |
ctggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcag |
218 |
Q |
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| T |
29220057 |
ctggaaaacatgtcctaatgctccaatttgtaaagcagtgatgcagcag |
29220009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 40672588 - 40672231
Alignment:
| Q |
1 |
ttgataacacaccattcagggtcttatatctatgtgatattgctattttggttgttgacattat------tcatgatgatggcttacagccgcatactat |
94 |
Q |
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|||||||| ||||| | |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
40672588 |
ttgataacgcaccaattaggggttcatatctatgtgatattgctattttggttgttgacattatgcatgatcatgatgatggcttacaccc--------- |
40672498 |
T |
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| Q |
95 |
agacttacgtgatctatgaaaaatcaccaacaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctcca |
194 |
Q |
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| T |
40672497 |
agactcactcaatctattaaaaactaccaacaaacaattcattgttgccttgaatatggtcgacatgattcatcactggaaaacatgtcccaatgctcca |
40672398 |
T |
|
| Q |
195 |
tttcgtaaagcattgttgcagcagtctaaggatgttcaagatgagtttcataccaggctctctaaggttgtttctcagttcaagacacacggactaaata |
294 |
Q |
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| T |
40672397 |
tttcgtaaagcattgatgcagcagtctaagggtgttcaagatgactttcataccagggtctctaaggttgtttctcagttcaagacacacgggctaaata |
40672298 |
T |
|
| Q |
295 |
ctgacttgtattataaaaacgaaacaat---cggaggacaaacattcagcattgtgcccacaagtgc |
358 |
Q |
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|||| ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |
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| T |
40672297 |
ctgatttgtattataaaaacataactattggaggaggacaaacattcagcattgtgcccacaagtgc |
40672231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 44627000 - 44627071
Alignment:
| Q |
170 |
ctggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcagtctaaggatgttcaagatgagtt |
241 |
Q |
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| T |
44627000 |
ctggaaaacatgtcgcaatgctccaattcgtaaagcaatgacgcagcagtctaaggatgttcaaaatgagtt |
44627071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 44605015 - 44605055
Alignment:
| Q |
29 |
tctatgtgatattgctattttggttgttgacattattcatg |
69 |
Q |
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||||||||||||||| |||||||||||||||||||| |||| |
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| T |
44605015 |
tctatgtgatattgcaattttggttgttgacattatgcatg |
44605055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 44626780 - 44626820
Alignment:
| Q |
29 |
tctatgtgatattgctattttggttgttgacattattcatg |
69 |
Q |
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||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
44626780 |
tctatgtgatattgcaattttggttgtggacattatgcatg |
44626820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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