View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_12 (Length: 379)
Name: NF1472_low_12
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_12 |
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| [»] scaffold0351 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 36962814 - 36962696
Alignment:
| Q |
131 |
tcacaatcctccctcatagataaatattaatagaatatgtgataagagaaataacatgttccaaagtgtaaaataacattaaaaaatcaccactatataa |
230 |
Q |
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| T |
36962814 |
tcacaatcctccctcatagataaatattaatagaatatgtgataagagaaataacatgtgcgaaagtgtaaaataagattaaaaaatcaccactatataa |
36962715 |
T |
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| Q |
231 |
tatacatgggaaaatataa |
249 |
Q |
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| T |
36962714 |
tatacatgggaaaatataa |
36962696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 36945555 - 36945472
Alignment:
| Q |
133 |
acaatcctccctcatagataaatattaatagaatatgtgataagagaaataacatgttccaaagtgtaaaataacattaaaaaa |
216 |
Q |
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| T |
36945555 |
acaatcctcattcatgggtaaatattaatagaatacgtgatgagagaaataacatgtgcaaaagtgtaaaataatattaaaaaa |
36945472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 36945384 - 36945331
Alignment:
| Q |
303 |
attgacaatccaaaattgtctgatctgcttcaagctttctcagcaaatctgctt |
356 |
Q |
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| T |
36945384 |
attgacaatccaaaattgtttgaactgcttcaagctttctcagcaaatatgctt |
36945331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 17869 - 17903
Alignment:
| Q |
87 |
gcacctgacaatatttattgaatttttagctttat |
121 |
Q |
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| T |
17869 |
gcacctgacaacatttattgaatttttagctttat |
17903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 113910 - 113876
Alignment:
| Q |
87 |
gcacctgacaatatttattgaatttttagctttat |
121 |
Q |
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| T |
113910 |
gcacctgacaacatttattgaatttttagctttat |
113876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 27542451 - 27542493
Alignment:
| Q |
79 |
ttcaggccgcacctgacaatatttattgaatttttagctttat |
121 |
Q |
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| T |
27542451 |
ttcaggctgcacctaacaacatttattgaatttttagctttat |
27542493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 7905727 - 7905687
Alignment:
| Q |
79 |
ttcaggccgcacctgacaatatttattgaatttttagcttt |
119 |
Q |
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||||||| || |||||||| ||||||||||||||||||||| |
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| T |
7905727 |
ttcaggctgcccctgacaacatttattgaatttttagcttt |
7905687 |
T |
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