View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_14 (Length: 370)
Name: NF1472_low_14
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 193 - 358
Target Start/End: Complemental strand, 32664240 - 32664075
Alignment:
| Q |
193 |
tagaattgagtgcaagtttaaatgcttgctgaaatgttttcccccctctgaatttctaatgtttttgtaattgggttgttgtgaatcaggaggatgatga |
292 |
Q |
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| T |
32664240 |
tagaattgagtgcaagtttaaatgcttgctgaaatgtttttccccctctgaatttctaatgtttttgtaattgggttgttgtgaatcaggaggatgatga |
32664141 |
T |
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| Q |
293 |
gtgattacaaggtggaaatgatcaataatgccatgcaacagttttttgttgaattccatcgaccta |
358 |
Q |
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| T |
32664140 |
gtgattacaaggtggaaatgatcaataatgccacgcaacagttttttgttgaattccatcgaccta |
32664075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 32664376 - 32664238
Alignment:
| Q |
17 |
aaatttatatgtgctcaaacaatgtggaaaaatagtcaacgaactcctcaagaaacgaaagcataaggcctagggcaagcacttttgtttttgtggcttt |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32664376 |
aaatttatatctgctcaaacaatgtggaaaaatagtcaacgaactcctcaagaaacgaaagcataaggcctagggcaagcactt------ttgtggcttt |
32664283 |
T |
|
| Q |
117 |
agaatttcaattttact----cggtggaattagatagcaagctag |
157 |
Q |
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| T |
32664282 |
agaatttcaattttactctgacggtggaattagatagcaagctag |
32664238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 32638916 - 32638797
Alignment:
| Q |
237 |
cctctgaat-ttctaatgtttttgtaattgggttgttgtgaatcaggaggatgatgagtgattacaaggtggaaatgatcaataatgccatgcaacagtt |
335 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| | ||||||||| ||| |||||||||||| |
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| T |
32638916 |
cctctgaatcttctaatgtttttgtaattgggttgttatgaagcagga---tgatgagtgattacaaggtgaagatgatcaatgatgtcatgcaacagtt |
32638820 |
T |
|
| Q |
336 |
ttttgttgaattccatcgaccta |
358 |
Q |
| |
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|||| ||||||| |||||||||| |
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| T |
32638819 |
ttttcttgaatttcatcgaccta |
32638797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 32587556 - 32587481
Alignment:
| Q |
283 |
aggatgatgagtgattacaaggtggaaatgatcaataatgccatgcaacagttttttgttgaattccatcgaccta |
358 |
Q |
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| T |
32587556 |
aggatgatgagtgattacaaggtggaaatgattaatgatgccatacaagagttctttgttgaattccatcgaccta |
32587481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 41152338 - 41152229
Alignment:
| Q |
235 |
cccctctgaatttctaatgtttttgtaattgggttgttgtgaatcaggaggatgatgagtgattacaaggtggaaatgatcaataatgccatgcaacagt |
334 |
Q |
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||||||| ||||| |||| |||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||||||||| || ||||||| ||| |
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| T |
41152338 |
cccctctaaatttgtaatctttttgtaattgggttgttgtgaatc---aggttgatgactgattacaaagtggagatgatcaatggtggcatgcaagagt |
41152242 |
T |
|
| Q |
335 |
tttttgttgaatt |
347 |
Q |
| |
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| |||||| |||| |
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| T |
41152241 |
tctttgttcaatt |
41152229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 41144371 - 41144266
Alignment:
| Q |
243 |
aatttctaatgtttttgtaattgggttgttgtgaatcagg-aggatgatgagtgattacaaggtggaaatgatcaataatgccatgcaacagttttttgt |
341 |
Q |
| |
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|||||||||| ||||| || |||||||||||||||||| |||||||||| |||||| |||||||| ||||||||| || ||||||| |||||||||| |
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| T |
41144371 |
aatttctaatctttttctatttgggttgttgtgaatcaatcaggatgatgactgattataaggtggagatgatcaatgattgcatgcaagagttttttgt |
41144272 |
T |
|
| Q |
342 |
tgaatt |
347 |
Q |
| |
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| |||| |
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|
| T |
41144271 |
tcaatt |
41144266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 41167574 - 41167468
Alignment:
| Q |
239 |
tctgaatttctaatgtttttgtaattgggttgttgtgaatcaggaggatgatgagtgattacaaggtggaaatgatcaataatgccatgcaacagttttt |
338 |
Q |
| |
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||||||||| |||| ||||||| ||||||||| |||||||| |||||||||| |||| |||| || || ||||||||| ||| ||||||| | || || |
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| T |
41167574 |
tctgaatttgtaatctttttgtgattgggttgctgtgaatc---aggatgatgattgatcacaaagtcgagatgatcaatgatggcatgcaagaattctt |
41167478 |
T |
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| Q |
339 |
tgttgaattc |
348 |
Q |
| |
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| |||||||| |
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| T |
41167477 |
tcttgaattc |
41167468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 314
Target Start/End: Original strand, 11259367 - 11259398
Alignment:
| Q |
283 |
aggatgatgagtgattacaaggtggaaatgat |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
11259367 |
aggatgatgagtgattacaaggtggaaatgat |
11259398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 26403025 - 26402986
Alignment:
| Q |
243 |
aatttctaatgtttttgtaattgggttgttgtgaatcagg |
282 |
Q |
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| T |
26403025 |
aatttctaatctttttgtaattgggttgttgtgaatcagg |
26402986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 30780245 - 30780160
Alignment:
| Q |
18 |
aatttatatgtgctcaaacaatgtggaaaaatagtcaacgaactcctcaagaaacgaaagcataaggcctagggcaagcacttttgt |
104 |
Q |
| |
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||||||| |||||||||||||| || |||||| |||||| || |||||||| ||||||||| |||||| |||||||||||||| |
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| T |
30780245 |
aatttatttgtgctcaaacaatatg-aaaaatggtcaaccgacatctcaagaagcgaaagcatgtggcctaaagcaagcacttttgt |
30780160 |
T |
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