View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_15 (Length: 367)
Name: NF1472_low_15
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 359
Target Start/End: Original strand, 5112614 - 5112958
Alignment:
| Q |
6 |
aattaggagaacaaggaagaagagggagtgttactaaatttggattagtagttgaatttttgtccaaattgttgcaattgagaactccaactccatgatt |
105 |
Q |
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| T |
5112614 |
aattaggagaacaaggaagaagagggagtgttactaaatttggattagtagttgaatttttgt---------tgcaattgagaactccaactccatgatt |
5112704 |
T |
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| Q |
106 |
tggaagagggagttgaggaagtgaagaaggaggaacaaaattaccttgtaaagtaaggttttttattggagatgttacatgcaaaggttgacaaaaacct |
205 |
Q |
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| T |
5112705 |
tggaagagggagttgaggaagtgaagaaggaggaacaaaattaccttgtaaagtaaggttttttattggagatgttacatgcaaaggttgacaaaaacct |
5112804 |
T |
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| Q |
206 |
aagacatgtgttttttgtcttttcaaagaagagggtagtgaaataggagctctacctctctttcttgtccttgttggtcttgcttgtaactgtggccaaa |
305 |
Q |
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| T |
5112805 |
aagacatgtgttttttgtcttttcaaagaagagggtagtgaaataggagctctacctctctttcttgtccttgttggtcttgcttgtaactgtggccaaa |
5112904 |
T |
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| Q |
306 |
gattcctaaggtaaggagattgtttgatcttttgagaaagtgagtttgatgatg |
359 |
Q |
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| T |
5112905 |
gattcctaaggtaaggagattgtttgatcttttgagaaagtgagtttgatgatg |
5112958 |
T |
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