View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1472_low_18 (Length: 330)
Name: NF1472_low_18
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 30343932 - 30344101
Alignment:
| Q |
146 |
aagtttataaacggaccaaaatgcattatgaatcgtttttgttaattttagcattaggaatcaggaaaagaatcaaaaagtgaaagcactatacaataca |
245 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30343932 |
aagtttatatacggaccaaaatgcattatgaatcgtttttgttaattttagcattaggaatcaggaaaagaatcaaaaagtgaatgcactatacaataca |
30344031 |
T |
|
| Q |
246 |
cacaaacaaaatagatgacaaagcagcaatgttcttaaacaatgcaatttgtcagtgtgttaagtcatta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30344032 |
cacaaacaaaatagatgacaaagcagcaatgttcttaaacaatgcaatttgtcagtgtgttaagtcatta |
30344101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 30343794 - 30343902
Alignment:
| Q |
5 |
gatttccctacaataacaggacattcagtactatatgattgaaaagaaatagttgtgaacttctgcgaaagagtgtatagaaatgcttggttaaaccatc |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343794 |
gatttccctacaataagaggacattcagtactatatgattgaaaagaaatagttgtgaacttctgcgaaagagtgtatagaaatgcttggttaaaccatc |
30343893 |
T |
|
| Q |
105 |
aactttcag |
113 |
Q |
| |
|
||||||||| |
|
|
| T |
30343894 |
aactttcag |
30343902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 29221037 - 29221070
Alignment:
| Q |
5 |
gatttccctacaataacaggacattcagtactat |
38 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
29221037 |
gatttccctacaataacaggacattcattactat |
29221070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University