View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1472_low_22 (Length: 292)
Name: NF1472_low_22
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_22 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 12571975 - 12572237
Alignment:
| Q |
20 |
ttatggtcataattgtacattatcttgctgttttggttcaggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatccactccgtt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12571975 |
ttatggtcataattgtacattatcttgctgttttggttcaggaagctactggattcacaagtttctcgagcttgatgaggaaggaagaatccactccgtt |
12572074 |
T |
|
| Q |
120 |
tggcagaccttacaatttcatggcgcctcaagatgatgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12572075 |
tggcagaccttacaatttcatggcgcctcaagatgatgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttat |
12572174 |
T |
|
| Q |
220 |
atctgatatgctctattttactttgatttttctctctaacagcaaactccaaacaaacctatg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12572175 |
atctgatatgctctattttactttgatttttctctctaacagcaaactccaaacaaacctatg |
12572237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 286
Target Start/End: Complemental strand, 20020175 - 20019954
Alignment:
| Q |
56 |
ttcaggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatccactccgtttggcagaccttacaatttcatggcgcctcaagatga |
155 |
Q |
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||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||| ||| ||||||| || |
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| T |
20020175 |
ttcaggaagct-cgggattcacaagtttcacgagcttgatggggaagaaagaatccattccatttggcagagcttacaatttcttggtgcctcaa---ga |
20020080 |
T |
|
| Q |
156 |
tgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctctc |
255 |
Q |
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|||||||||||||||||||| | |||||| ||||||| |||| ||||| ||||||| || ||||||| ||||||||| ||||||||||||||| |
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| T |
20020079 |
tgtcagtaaatcatgttatgaccgtcttaactaattttgtttacgtgca-----gtctgcttttagctgatataatctattttaatttgatttttctctc |
20019985 |
T |
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| Q |
256 |
taacagcaaactccaaacaaacctatgctac |
286 |
Q |
| |
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|||||||||||||||||||| |||||||||| |
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| T |
20019984 |
taacagcaaactccaaacaaccctatgctac |
20019954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 282
Target Start/End: Complemental strand, 20030158 - 20029955
Alignment:
| Q |
72 |
attcacaagtttctcgagcttgatggggaaggaagaatccactccgtttggcagaccttacaatttcatggcgcctcaagatgatgtcagtaaatcatgt |
171 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
20030158 |
attcacaagtttctcgagcttaatggggaagaaagaatccaatccatttggcagaccttacaatttctcggcgccgcaa---gatgtcagtaaatcatgt |
20030062 |
T |
|
| Q |
172 |
tatggctatcttaattaatttt-ctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctctctaacagcaaactcca |
270 |
Q |
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| | |||||| ||||||| ||||||||||| | ||||||||| |||||||| | |||||||||||||||||||| |||| |||||||||||| |
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| T |
20030061 |
aaaccatgtcttaactaattttcctttatgtgca-----aactgcttatagctgatatgatatattttactttgatttttctttctagcagcaaactcca |
20029967 |
T |
|
| Q |
271 |
aacaaacctatg |
282 |
Q |
| |
|
|||||||||||| |
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| T |
20029966 |
aacaaacctatg |
20029955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 286
Target Start/End: Complemental strand, 20000913 - 20000786
Alignment:
| Q |
154 |
gatgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctc |
253 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| ||||||| | | || |||||| |||||||| |||||||| |||||||||||||| |
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| T |
20000913 |
gatgtcagtaaatcatgttatggcagtcttaattaattttccttatgtgaagt-----cttcttatagctgatatgatctatttttctttgatttttctc |
20000819 |
T |
|
| Q |
254 |
tctaacagcaaactccaaacaaacctatgctac |
286 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
20000818 |
tctagcagcaaactccaaacaaacctatgctac |
20000786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 20010648 - 20010535
Alignment:
| Q |
168 |
atgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctctctaacagcaaact |
267 |
Q |
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|||||||| || |||||| ||||||| |||||||||| || ||||| ||| |||||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
20010648 |
atgttatgtctgtcttaactaattttatttatgtgca----ga-ctgctcatagctgatatgatctattttactttgatttttctctctaacaacgaact |
20010554 |
T |
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| Q |
268 |
ccaaacaaacctatgctac |
286 |
Q |
| |
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|||||||| || |||||| |
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| T |
20010553 |
tcaaacaaagctctgctac |
20010535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 286
Target Start/End: Original strand, 35039327 - 35039546
Alignment:
| Q |
56 |
ttcaggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatccactccgtttggcagaccttacaatttcatggcgcctcaagatga |
155 |
Q |
| |
|
||||||||||||| ||| |||||| ||||| ||||| |||| |||| ||||||||| ||| ||| ||||||||||||||| | ||| | ||||| || |
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| T |
35039327 |
ttcaggaagctacgagatgcacaagcttctcaagcttaatggagaagaaagaatccaatccatttcgcagaccttacaattccttggtgtctcaa---ga |
35039423 |
T |
|
| Q |
156 |
tgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatg--ctctattttactttgatttttctc |
253 |
Q |
| |
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| ||||||||||||||||||||| | || |||| |||||| ||| |||||||||| || ||||| || | |||||||||| ||||||| |
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| T |
35039424 |
tatcagtaaatcatgttatggctgtgtt-----gttttatttatg-----tgtcgtctgcttatagctcatatgatcttttttttactttgccttttctc |
35039513 |
T |
|
| Q |
254 |
tctaacagcaaactccaaacaaacctatgctac |
286 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |
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|
| T |
35039514 |
tctatcagcaaaccccaaacaaacctatgctac |
35039546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 35038881 - 35038818
Alignment:
| Q |
222 |
ctgatatgctctattttactttgatttttctctctaacagcaaactccaaacaaacctatgcta |
285 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
35038881 |
ctgatatgatcttttttactttgatttttctcaataggagcaaactccaaacaaacctatgcta |
35038818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 286
Target Start/End: Complemental strand, 48301511 - 48301284
Alignment:
| Q |
56 |
ttcaggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatccactccgtttggcagaccttacaatttcatggcgcctcaagatga |
155 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || |||||| |||| ||||||| | ||| | ||| ||||||||| |||| | |||||||||| |
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|
| T |
48301511 |
ttcaggaagctactggattatcaagtttctcaagtttgatgaggaaagaagaattcgatccatctggaagaccttactattttgttctgcctcaagat-- |
48301414 |
T |
|
| Q |
156 |
tgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtg-atctgcttatatctgatatgctctattttactttgatttttctct |
254 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| | || ||| | || | | | ||| || ||||||||||||||| ||| |||||||| | |
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|
| T |
48301413 |
tgtcagtaaatcatgttattgctatcttaactaattttc--tctgcgcagtctgcttatagtcatagctaatatgctctattttatttttatttttcttt |
48301316 |
T |
|
| Q |
255 |
ctaacagcaaactccaaacaaacctatgctac |
286 |
Q |
| |
|
||| || ||||||||| |||| |||||||||| |
|
|
| T |
48301315 |
ctagcaacaaactccatacaatcctatgctac |
48301284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 16623 - 16497
Alignment:
| Q |
161 |
gtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatc-tgcttatatctgatatgctctattttactttgatttttctctctaac |
259 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||| |||||||| | || | | ||||| || ||| | ||| |||| ||||||||||| |||||| |
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|
| T |
16623 |
gtaaatcatgttatgactatcttaagtaactttctctatgtgcattctgcttatagttatagctaataagttctgttttgtgttgatttttctttctaac |
16524 |
T |
|
| Q |
260 |
agcaaactccaaacaaacctatgctac |
286 |
Q |
| |
|
|||||| ||||||||| |||||||||| |
|
|
| T |
16523 |
agcaaattccaaacaatcctatgctac |
16497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 912488 - 912438
Alignment:
| Q |
60 |
ggaagctaccggattcacaagtttctcgagcttgatggggaaggaagaatc |
110 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
912488 |
ggaagctattggattcacaagtttcttgagcttgatggggaaagaagaatc |
912438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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