View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_23 (Length: 288)
Name: NF1472_low_23
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 21178888 - 21179049
Alignment:
| Q |
18 |
tcaacaagctgaattgtttcttcaacac-ccaacaagaaataaattcttacttggacaaaatgaaatatttgcgttgtgctaaaggagctcaaaacaaaa |
116 |
Q |
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| T |
21178888 |
tcaacaagctaaattgtttctttaacaatccaacaaaaaataaattcttacttggacaaaatgaaatatttgtgttgtgctaaaggatctcaaaacaaaa |
21178987 |
T |
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| Q |
117 |
gaacaatttttagtatcttaaattaagaacaaaaagagagtgcttttgaagcatttgatatt |
178 |
Q |
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| T |
21178988 |
gaacaatttttagtatcttaaattaagaacaaaaagagagtgcttttgaagcatttgatatt |
21179049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 21184645 - 21184728
Alignment:
| Q |
182 |
acgcttgctgctttctcaaaaattcggtgccttctaccttctagtatgcttggtatttataggcaaagaagggctcaattgaat |
265 |
Q |
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| T |
21184645 |
acgcttgctgctttctcaaaaattcggtgccttctaccttgtagtatgcttggtatttataggcaaagaagtgctcaattgaat |
21184728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 21186080 - 21185947
Alignment:
| Q |
44 |
acccaacaagaaataaattcttacttggacaaaatgaaatatttgcgttgtgctaaaggagctcaaaacaaaagaacaatttttagtatcttaaattaag |
143 |
Q |
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| T |
21186080 |
acccaacaaaaaataaatttttacttggccaaaataaaatatttgtgctttactaaaagagctcaaaacaaaa-aataatttttaatattttaaatgaag |
21185982 |
T |
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| Q |
144 |
aacaaaaagagagtgcttttgaagcatttgatatt |
178 |
Q |
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| T |
21185981 |
aacaaaaagagagtttttttggagtatttaatatt |
21185947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 22395782 - 22395649
Alignment:
| Q |
44 |
acccaacaagaaataaattcttacttgga-caaaatgaaatatttgcgttgtgctaaaggagctcaaaacaaaagaacaatttttagta-tcttaaatta |
141 |
Q |
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|||||| ||||||||| || ||||||||| |||||| ||||| ||| ||| | ||||| ||||||||||||||||| ||| |||||||| ||| |||| | |
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| T |
22395782 |
acccaataagaaataactttttacttggatcaaaataaaataattgtgttttactaaaagagctcaaaacaaaagagcaa-ttttagtattctaaaatga |
22395684 |
T |
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| Q |
142 |
agaacaaaaagagagtgcttttgaagcatttgatatt |
178 |
Q |
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| T |
22395683 |
agaacaaaaagaga--gcttttggagtatttgatatt |
22395649 |
T |
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