View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_24 (Length: 280)
Name: NF1472_low_24
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_24 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 37718781 - 37719015
Alignment:
| Q |
44 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37718781 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
37718880 |
T |
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| Q |
144 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37718881 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactgactacaatt |
37718980 |
T |
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| Q |
244 |
ttgaaatccctctatggcttcactataaaatttgtaa |
280 |
Q |
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| T |
37718981 |
ttgaaatccctctatggc--cactataaaatttgtaa |
37719015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 44 - 280
Target Start/End: Complemental strand, 4436379 - 4436143
Alignment:
| Q |
44 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
143 |
Q |
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| T |
4436379 |
taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
4436280 |
T |
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| Q |
144 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
243 |
Q |
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| T |
4436279 |
taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactaactacaatt |
4436180 |
T |
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| Q |
244 |
ttgaaatccctctatggcttcactataaaatttgtaa |
280 |
Q |
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| T |
4436179 |
ttgaaatccctctatggcttcactataaaatttgtaa |
4436143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 4092582 - 4092392
Alignment:
| Q |
73 |
ttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatttcaaacaactaaaaatatcaaat |
172 |
Q |
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| T |
4092582 |
ttgtgatctttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatggttgatactaaatttcaaacaactaaaaatatcacat |
4092483 |
T |
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| Q |
173 |
tcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactactgactacaattttgaaatccctctatggct |
262 |
Q |
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| T |
4092482 |
tcaatttctataattttgaaaccccttctatggctgactccagtacaggtttgactactattgactacaattttgaaacccccctatggct |
4092392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 46594459 - 46594695
Alignment:
| Q |
44 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
143 |
Q |
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| T |
46594459 |
taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
46594558 |
T |
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| Q |
144 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
243 |
Q |
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| T |
46594559 |
taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactaactacaatt |
46594658 |
T |
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| Q |
244 |
ttgaaatccctctatggcttcactataaaatttgtaa |
280 |
Q |
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| T |
46594659 |
ttgaaatccctctatggcttcactataaaatttgtaa |
46594695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 25490221 - 25490131
Alignment:
| Q |
59 |
cctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatt |
149 |
Q |
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| T |
25490221 |
cctcaacttagttctagtgatccttttatcaaacggttataatgcaaagtagctttcatcaaagtgaatgacttgtaattgatactgaatt |
25490131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 45 - 262
Target Start/End: Complemental strand, 47521879 - 47521661
Alignment:
| Q |
45 |
aagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatact |
144 |
Q |
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| T |
47521879 |
aagaatgaggcttgcctcaagtaagttcttgtgatttttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatagttgatact |
47521780 |
T |
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| Q |
145 |
aaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactactgactacaatt |
243 |
Q |
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| T |
47521779 |
aaatttcaaacaactaaaaatatcacattcaatttctataattttgaaaccccttctatggttgattccagtacaggtttgactactactgactacaatt |
47521680 |
T |
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| Q |
244 |
ttgaaatccctctatggct |
262 |
Q |
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|||||| |||||||||||| |
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| T |
47521679 |
ttgaaacccctctatggct |
47521661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 26496597 - 26496407
Alignment:
| Q |
44 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
143 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26496597 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
26496498 |
T |
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| Q |
144 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactact |
233 |
Q |
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| T |
26496497 |
taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaacccattcaatggctgattccagtacaggtttgactactact |
26496407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 38016318 - 38016358
Alignment:
| Q |
56 |
ttgcctcaagtaagttcttgtgatctttttatcgaacaatt |
96 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
38016318 |
ttgcctcaagtaagttcttgtgatctttttattgaacaatt |
38016358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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