View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_4 (Length: 520)
Name: NF1472_low_4
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 25 - 503
Target Start/End: Original strand, 6885484 - 6885956
Alignment:
| Q |
25 |
attttctgtttgcaaaagctaaaaatgaattgctaacaaactcgctagcacaaggcatgctaagcgaagaaaattacagtcaaacatgatccattggtgt |
124 |
Q |
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| T |
6885484 |
attttctgtttgcaaaagctaaaaatgatttgctaaaaaactcgctagcacaaggcatgctaagcgaagaaaattacagtcaaacatgatccattggtgt |
6885583 |
T |
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| Q |
125 |
aaca-tattgacaacggttctttacaaacaaaaacaaaaagtgtgtgcaagacttttcacgttcgcaccatagaattagcccaaaaatttatgtgaggtt |
223 |
Q |
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| T |
6885584 |
aacactattgacaacggttctttacaaacaaaaacaaatagcgtgtgcaatacttttcacgtaagcaccatagaattagcccaaaaatttatgtgaggtt |
6885683 |
T |
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| Q |
224 |
tgagttgaacatatacatggaaaatgtagcatagatcgatacattaacaacacatatggtcgcattgaattactgtattttctcgaattattattgatgc |
323 |
Q |
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| T |
6885684 |
tgagttgaatatatacatggaaaatgtggcatagaccgatacatcaacaacacatatggttgcattgaattactgtattttctcgaattattattgatgc |
6885783 |
T |
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| Q |
324 |
caacatagtgattactgattagtgattgagatggaagaaaatataataagttaggagaatacatttaaaaaatatacatacccggtgatattgcagcact |
423 |
Q |
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| T |
6885784 |
caacatagtgattaatgatta-------agatggaagaaaatataataagttaggagaatacatttaaaaaatatacatacccggtgatattgcagcact |
6885876 |
T |
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| Q |
424 |
aatttgcttggaggcagcatatatgtagcttacaagaggcattttcttgatgaacaattcacctaaggtaaggacagaag |
503 |
Q |
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| T |
6885877 |
aatttgcttggaggcagcatatatgtagcttacaagaggcattttcttgatgaacaattcacctaaggtaaggacagaag |
6885956 |
T |
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