View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_5 (Length: 495)
Name: NF1472_low_5
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 144 - 338
Target Start/End: Original strand, 13889911 - 13890116
Alignment:
| Q |
144 |
caaccataactcaacaaataaaagcttcaacttcttttttccgatcaaaattgaacaaagaaagccaccaaattagtcaatctttccttaat-------- |
235 |
Q |
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| T |
13889911 |
caacaataactaaacaaataaaagcttcaacttcttttttccgattaaaattgaacaaagaaagccaccaaattagtcaatctttccttaattaagtata |
13890010 |
T |
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| Q |
236 |
--ggtcaaaa-gacttacttaaccatgccagattaacttcttctaaacataagaatttccaatcaaattattgccgttgaccatgcatagattcattaac |
332 |
Q |
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| T |
13890011 |
atggtcaaaaagacttacttaaccatgccagattaacttcttctaaacataagaatttccaatcaaattattgccgttgaccatgcatagattcattaac |
13890110 |
T |
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| Q |
333 |
taaggt |
338 |
Q |
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|||||| |
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| T |
13890111 |
taaggt |
13890116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 406 - 475
Target Start/End: Original strand, 13890184 - 13890253
Alignment:
| Q |
406 |
gaccaaaccacccttcttcactctctctatctctatctatacatttcatttccctttattctctttaacc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13890184 |
gaccaaaccacccttcttcactctctctatctctatctatacatttcatttccctttattctctttaacc |
13890253 |
T |
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