View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_7 (Length: 441)
Name: NF1472_low_7
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 424
Target Start/End: Complemental strand, 1318623 - 1318210
Alignment:
| Q |
13 |
attatactaattaaggtagaga--tagagaaaaacatacactctcacacgaggctgcaccaaaatcagggaccattcaccactaatgaaatgatttatgg |
110 |
Q |
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| T |
1318623 |
attagactaattaaggtagagagatagagaaaaacatacactctcacacgaggctgcaccaaaatcagtgaccagtcaccactaatgaaatgatttattg |
1318524 |
T |
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| Q |
111 |
tcattgtgataatcaagaagcaagccaaattgaaaagattaataaattggaagattttggtttctgaagagattggtagaaagatttgagctagcaaaga |
210 |
Q |
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| T |
1318523 |
tcattgtgataatcaagaagcaagccaaattgaaaagattaataaattggaagattttggtttctgaagagattggttgaaagatttgagctagcaaaga |
1318424 |
T |
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| Q |
211 |
agaaaattttggtgttgtattttgtaatgagtgatgaacaactatggttattatattacacagatgcaaaagtggcatttgattttgatgacaacattca |
310 |
Q |
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| T |
1318423 |
agaaaattttggtgttggattttgtaatgagtgatgaacaactatggttattatattacacagatgcaaaagtggcatttgattttgatgacaacattca |
1318324 |
T |
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| Q |
311 |
atgtgcataatgttgaagttatgtcaacannnnnnngtccttttagtggtatcatagctacttgtgcaagtgtaactgaaattgtgtcgaaatatgtggt |
410 |
Q |
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| T |
1318323 |
atgtgcataatgttgaagttatgtcaacatttttttgtccttttagtggcatcatagctacttgtgcaagtgtaactgaaattgtgtcgaaatatgtggt |
1318224 |
T |
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| Q |
411 |
atactgccacatgt |
424 |
Q |
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| T |
1318223 |
atactgccacatgt |
1318210 |
T |
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