View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1472_low_9 (Length: 395)
Name: NF1472_low_9
Description: NF1472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1472_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 215 - 379
Target Start/End: Original strand, 42759628 - 42759792
Alignment:
| Q |
215 |
gaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacag |
314 |
Q |
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| T |
42759628 |
gaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacag |
42759727 |
T |
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| Q |
315 |
tcaggcatgtatatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaag |
379 |
Q |
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| T |
42759728 |
tcaggcatgtatatatatacagagggaataaagtgcatgattgtgttaatatgcatgggaaaaag |
42759792 |
T |
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Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 42759433 - 42759531
Alignment:
| Q |
16 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaattggatacttatattaaacagaaatagtctggaacaaaatagatttggcaaactt |
114 |
Q |
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| T |
42759433 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaactagatacttaaattaaacagaaatagtcttgaacaaaatagatttggcaaactt |
42759531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 227 - 379
Target Start/End: Complemental strand, 1402208 - 1402056
Alignment:
| Q |
227 |
aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacagtcaggcatgtat |
326 |
Q |
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| T |
1402208 |
aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaacggaaacagtcaggcatgtgt |
1402109 |
T |
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| Q |
327 |
atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaag |
379 |
Q |
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| T |
1402108 |
atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaag |
1402056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 1402400 - 1402306
Alignment:
| Q |
16 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaattggatacttatattaaacagaaatagtctggaacaaaatagatttggcaaa |
111 |
Q |
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| T |
1402400 |
cagagaattacttagggcaaaatataaatggaattgaaatgaaactggatactta-attaaacagatatagtcttgaacaaaatagatttggcaaa |
1402306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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