View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_high_17 (Length: 270)
Name: NF14730_high_17
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 22459119 - 22458875
Alignment:
| Q |
8 |
agtgagatgaatgatacaagtggaaaagaacatagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggaga |
107 |
Q |
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| T |
22459119 |
agtgaaatgaatgatacaagtggaaaagaacatagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggaga |
22459020 |
T |
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| Q |
108 |
accttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagt |
207 |
Q |
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| T |
22459019 |
accttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagt |
22458920 |
T |
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| Q |
208 |
gcacacaattgtcaccattgttggaaagggaggacaaggaaaaac |
252 |
Q |
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| T |
22458919 |
gcacacaattgtcaccattgttggaaagggaggacaaggaaaaac |
22458875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 22482100 - 22481856
Alignment:
| Q |
8 |
agtgagatgaatgatacaagtggaaaagaacatagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggaga |
107 |
Q |
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| T |
22482100 |
agtgaaatgaatgatacaagtggaaaagaacatagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggaga |
22482001 |
T |
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| Q |
108 |
accttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagt |
207 |
Q |
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| T |
22482000 |
accttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagt |
22481901 |
T |
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| Q |
208 |
gcacacaattgtcaccattgttggaaagggaggacaaggaaaaac |
252 |
Q |
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| T |
22481900 |
gcacacaattgtcaccattgttggaaagggaggacaaggaaaaac |
22481856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 22443243 - 22443136
Alignment:
| Q |
134 |
gatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgttggaa |
233 |
Q |
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||||||| |||| |||| |||||||||| |||||| ||| | | ||||||| ||||||||||| ||||||| | |||| ||||| |||||||||||| |
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| T |
22443243 |
gatgaagctgatattgttggctttgaagagccaagagacaaattgattgatttgttggtagagggaagagaagaccgcacagttgtctccattgttggaa |
22443144 |
T |
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| Q |
234 |
agggagga |
241 |
Q |
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| T |
22443143 |
tgggagga |
22443136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 22632398 - 22632261
Alignment:
| Q |
105 |
agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagaga |
204 |
Q |
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| T |
22632398 |
agaaccttcgagacgctccattttatatggatgaagctgatgttgtgggatttgaagagccaatagagaaactaattaattggctggtagagggaagagc |
22632299 |
T |
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| Q |
205 |
agtgcacacaattgtcaccattgttggaaagggaggac |
242 |
Q |
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| T |
22632298 |
agatcgcacagttgtctccattattggaatgggaggac |
22632261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 252
Target Start/End: Complemental strand, 22468481 - 22468334
Alignment:
| Q |
105 |
agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagaga |
204 |
Q |
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||||||||||| | |||| ||||| ||| ||||||| |||| |||| || ||||||| ||| || ||| | | ||||||| ||||||||||| |||| |
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| T |
22468481 |
agaaccttcgagacgctccattttatatggatgaagctgatcttgtgggatttgaagagccacgagacaaattgattgatttgttggtagagggaagagc |
22468382 |
T |
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| Q |
205 |
agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaac |
252 |
Q |
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| T |
22468381 |
agagcgcaccgttgtctccatagttggaatgggaggactgggaaaaac |
22468334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 29611088 - 29611001
Alignment:
| Q |
106 |
gaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggta |
193 |
Q |
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| T |
29611088 |
gaaccttcgaaaggctccattttacatggatgaagctgacgttgcaggctttgaagagccaagagaaatattaattgattggctggta |
29611001 |
T |
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