View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_high_2 (Length: 557)
Name: NF14730_high_2
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 36 - 431
Target Start/End: Original strand, 9576794 - 9577205
Alignment:
| Q |
36 |
atttatcgttaaccggtcaaattacaatgttgaatgattttgagtcattacctacaaaagaaggaaaagatacagaagatttatgtaagaaaaatgagat |
135 |
Q |
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| T |
9576794 |
atttatcgttaaccggtcaagttacattgttgaatgattttgagtcattacctacaaaagaaggaaaagatacacaagatttatgtaagaaaaatgagat |
9576893 |
T |
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| Q |
136 |
gtggacctttagatactagataggaaataagagaaaatgacccaccaatccctaatcatggggagaaatgaccaaccaaaccctcacaagttgcctaatt |
235 |
Q |
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| T |
9576894 |
gtggacctttagatactagataggaaataagagaaaatgacccaccaatccctaatcatggggagaaatgacgaaccaaaccctcacaagttgcctaatt |
9576993 |
T |
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| Q |
236 |
acacaaagaaccaagatacttgttctctttctctataaatactttgtcattcttctcnnnnnnnnnatgttaagacacttagaaaaaattgagagaaatt |
335 |
Q |
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| T |
9576994 |
acac-aagaaccaagatacttatcctctttctctataaatactttgtcattcttctc--tttttttatgttaagacacttagaaaaaattgagagaaatt |
9577090 |
T |
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| Q |
336 |
tgtgatgaattg-------------------tctcccttggccaagttggtatgtgtgtggaacaacttcaatttcttctatccattttattctttaatt |
416 |
Q |
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| T |
9577091 |
tgtggtgaattgtctccctctcctctctctctctcccttggccaagttggtatgtgtgtggaacaacttcaatttcttctatccattttattctttaatt |
9577190 |
T |
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| Q |
417 |
ttacttctagttgtc |
431 |
Q |
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| T |
9577191 |
ttacttctagttgtc |
9577205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 75 - 279
Target Start/End: Original strand, 9607942 - 9608148
Alignment:
| Q |
75 |
ttgagtcattacctacaaaagaaggaaaagatacagaaga--tttatgtaagaaaaatgagatgtggacctttagatactagataggaaataagagaaaa |
172 |
Q |
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| T |
9607942 |
ttgagtcattaccaacaaaagacgaaaaggaaacaaaatagctttatgtaaggaaaatgagacttggacatttagatgctagctaggaaataagagaaaa |
9608041 |
T |
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| Q |
173 |
tgacccaccaatccctaa-tcatggggagaaatgaccaaccaaaccctcacaagttgcctaattacacaaagaaccaagatacttgttctctttctctat |
271 |
Q |
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| T |
9608042 |
tgaccaaccaagccttaactagaggggaaaaatgaccaaccaaactctcacaggaaacctaattaca-tgataaccaagacacttcctctcttcctctat |
9608140 |
T |
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| Q |
272 |
aaatactt |
279 |
Q |
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| T |
9608141 |
aaatactt |
9608148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 9573267 - 9573353
Alignment:
| Q |
348 |
tctcccttggccaagttggtatgtgtgtgg--aacaacttcaatttcttctatccattttat-tctttaattttacttctagttgtc |
431 |
Q |
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||||||| |||||||||| ||| ||||| | || |||||||||||||||||||||| |||| ||||| ||| ||||| |||||||| |
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| T |
9573267 |
tctccctcggccaagttgatatatgtgtagcgaataacttcaatttcttctatccatattatctctttcattctacttttagttgtc |
9573353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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