View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_high_21 (Length: 229)
Name: NF14730_high_21
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 21156735 - 21156590
Alignment:
| Q |
13 |
aagaatatgtgaaactataatggattgtggatgtttgaatacaactgtagcacctgctatgctttgtgttttgtttaaatcatattatttgttataactc |
112 |
Q |
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| T |
21156735 |
aagaaaatgtgaaactataatggattgtggatgtttgaatacaactgtagcacctgctatgctttgtgttttgtttaaatcatattacttgttataactc |
21156636 |
T |
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| Q |
113 |
atcgttgtccaccatttttgtgtttgcaagaccaaataaaatagac |
158 |
Q |
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| T |
21156635 |
attgttgtccaccatttttgtgtttgcaagaccaaatcaaatagac |
21156590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 21156560 - 21156515
Alignment:
| Q |
165 |
tgaatgcactaatcttcacaaaattttgctcaaatctgccccctgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21156560 |
tgaatgcactaatcttcacaaaattttgctcaaatctgccccctgt |
21156515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 4117446 - 4117301
Alignment:
| Q |
13 |
aagaatatgtgaaactataatggattgtggatgtttgaatacaactgtagcacctgctatgctttgtgttttgtttaaatcatattatttgttataactc |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117446 |
aagaaaatgtgaaactataatggattgtggatgtttgaatataactgtagcacctgctatgctttgtgttttgtttaaatcatattatttgttataactc |
4117347 |
T |
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| Q |
113 |
atcgttgtccaccatttttgtgtttgcaagaccaaataaaatagac |
158 |
Q |
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| T |
4117346 |
attgttgtccaccatttttgtgtttgcaagaccaaatcaaatagac |
4117301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 4117270 - 4117223
Alignment:
| Q |
163 |
tttgaatgcactaatcttcacaaaattttgctcaaatctgccccctgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117270 |
tttgaatgcactaatcttcacaaaattttgctcaaatctgccccctgt |
4117223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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