View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_high_3 (Length: 488)
Name: NF14730_high_3
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 52682942 - 52683412
Alignment:
| Q |
1 |
caagttgaggtcttgagtggtgttatttgaaaatcacaaatccgacactgtacgtatacaccatataaaaataaacccaacacaattgtcgacctaacta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52682942 |
caagttgaggtcttgagtggtgttatttgaaaatcacaaatccgacactgtacgtatacaccatataaaaatacacccaacacaattgtcgacctaacta |
52683041 |
T |
|
| Q |
101 |
ggatagcgagaaaaatcaatnnnnnnncacaatactgcatcattatacagtgtcggacaacatttatgctgtcaaaatatcatttctggatcaactttga |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52683042 |
ggatagcgagaaaaatcaataaaaaaacacaatactgcatcattatacagtgtcggacaacatttatgctgtcaaaatatcatttctggatcaactttga |
52683141 |
T |
|
| Q |
201 |
ctcacattttctcataagctccctcatttaacttctttataaacacacctaaaaacataaaaacaagcgcttttcatcatgaggtaaaacctaaatactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52683142 |
ctcacattttctcataagctccctcatttaacttctttataaacacacctaaaaacataaaaacaagcccttttcatcatgaggtaaaacctaaatactt |
52683241 |
T |
|
| Q |
301 |
attgtagttgaaaagtttccatagggtagaagcttatctaaacttggcctcaatatctactagtactactaatacaaattatatggtaactacagtttac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52683242 |
attgtagttgaaaagtttccatagggtagaagcttatctaaacttggcctcaatatctactagtactaaaaatacaaattatatggtaactacagtttac |
52683341 |
T |
|
| Q |
401 |
aagtccaagtctagataacctacttgcaagattgtactacaaaacaatttctttttcattagaggctacct |
471 |
Q |
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| T |
52683342 |
aagtctaagtctagataacctacttgcaagattgtactacaaaacaatttctttttcattagaggctacct |
52683412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 140 - 461
Target Start/End: Original strand, 34212419 - 34212740
Alignment:
| Q |
140 |
tcattatacagtgtcggacaacatttatgctgtcaaaatatcatttctggatcaactttgactcacattttctcataagctccctcatttaacttcttta |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34212419 |
tcattatacagtgtcggacaacatttatgctgtgaaaatatcatttctgaatcaactttgactcacattttctcataagctccctcatttaacttcttta |
34212518 |
T |
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| Q |
240 |
taaacacacctaaaaacataaaaacaagcgcttttcatcatgaggtaaaacctaaatacttattgtagttgaaaagtttccatagggtagaagcttatct |
339 |
Q |
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| T |
34212519 |
taaacacacctaaaaacataaaaacaagcccttttcatcatgaggtaaaacctaaatacttattgtagttgaaaagtttccatagggtagaagcttatct |
34212618 |
T |
|
| Q |
340 |
aaacttggcctcaatatctactagtactactaatacaaattatatggtaactacagtttacaagtccaagtctagataacctacttgcaagattgtacta |
439 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34212619 |
aaacttggcctcaatatctactagtactaaaaatacaaattatatggtaactacagtttacaagtctaagtctagataacctacttgcaagattgtacta |
34212718 |
T |
|
| Q |
440 |
caaaacaatttctttttcatta |
461 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34212719 |
caaaacaatttctttttcatta |
34212740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 140 - 330
Target Start/End: Original strand, 14654003 - 14654193
Alignment:
| Q |
140 |
tcattatacagtgtcggacaacatttatgctgtcaaaatatcatttctggatcaactttgactcacattttctcataagctccctcatttaacttcttta |
239 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14654003 |
tcattatacagtgtcggacaacatttatgctgtgaaaatatcatttctgaatcaactttgactcacattttctcataagctccctcatttaacttcttta |
14654102 |
T |
|
| Q |
240 |
taaacacacctaaaaacataaaaacaagcgcttttcatcatgaggtaaaacctaaatacttattgtagttgaaaagtttccatagggtaga |
330 |
Q |
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| T |
14654103 |
taaacacacctaaaaacataaaaacaagcccttttcatcatgaggtaaaacctaaatacttattgtagttgaaaagtttccatagggtaga |
14654193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 331 - 461
Target Start/End: Original strand, 14654294 - 14654424
Alignment:
| Q |
331 |
agcttatctaaacttggcctcaatatctactagtactactaatacaaattatatggtaactacagtttacaagtccaagtctagataacctacttgcaag |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14654294 |
agcttatctaaacttggcctcaatatctactagtactaaaaatacaaattatatggtaactacagtttacaagtctaagtctagataacctacttgcaag |
14654393 |
T |
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| Q |
431 |
attgtactacaaaacaatttctttttcatta |
461 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14654394 |
attgtactacaaaacaatttctttttcatta |
14654424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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