View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_high_9 (Length: 353)
Name: NF14730_high_9
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_high_9 |
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| [»] chr5 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 36956395 - 36956043
Alignment:
| Q |
1 |
ccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956395 |
ccataaccagaaacacatttgccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaag |
36956296 |
T |
|
| Q |
101 |
tagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgat |
200 |
Q |
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||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
36956295 |
aagcggcacaacaattttgagagtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaattgaactgaacaatgat |
36956196 |
T |
|
| Q |
201 |
attgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatg |
300 |
Q |
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|||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
36956195 |
attgtgatgaagataatgaaaacatggaacattgcatgacatagattgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctactgatg |
36956096 |
T |
|
| Q |
301 |
ctgtgattataagtgttgaaacaattgtgaggttttctattctgtctttatat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956095 |
ctgtgattataagtgttgaaacaattgtgaggttttctattctgtctttatat |
36956043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 36935541 - 36935186
Alignment:
| Q |
1 |
ccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaag |
100 |
Q |
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||||||||||||||||||| | ||||| | |||||||| |||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||| |
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| T |
36935541 |
ccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaataagagcgattccaag |
36935442 |
T |
|
| Q |
101 |
tagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgat |
200 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
36935441 |
aagcggcataacgattttgagaggtaaagtcagcaattcagttaacccaaatgttgcccaaaagagtatgatggtagcactaatggaactgaacaatgat |
36935342 |
T |
|
| Q |
201 |
attgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatg |
300 |
Q |
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| |||||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||| ||||| |||||| || ||||||||||||||||| | |
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| T |
36935341 |
actgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgcttttccttctgcttcacatggaacggctaaacatgctgctactgaag |
36935242 |
T |
|
| Q |
301 |
ctgtgattataagtgttgaaacaattgtgag---gttttctattctgtctttatat |
353 |
Q |
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| |||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
36935241 |
cagtgattataagtgttgaaacaattgtaaggttgttttctattctgtctttatat |
36935186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 322
Target Start/End: Complemental strand, 36948318 - 36947998
Alignment:
| Q |
2 |
cataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| | ||| ||||||||||||||||| |
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| T |
36948318 |
cataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaaga |
36948219 |
T |
|
| Q |
102 |
agcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgata |
201 |
Q |
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| |||||||| ||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||| |
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| T |
36948218 |
attggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaataatgata |
36948119 |
T |
|
| Q |
202 |
ttgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgc |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
36948118 |
ttgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgc |
36948019 |
T |
|
| Q |
302 |
tgtgattataagtgttgaaac |
322 |
Q |
| |
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||||||||||| |||||||| |
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| T |
36948018 |
agtgattataagggttgaaac |
36947998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 37069660 - 37069970
Alignment:
| Q |
21 |
gccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttga |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||| || |||| |||||||| | |
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| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
121 |
gagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaa |
220 |
Q |
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| | ||||||| ||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
221 |
tgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaa |
320 |
Q |
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||||| |||||||||||||| || |||| ||||||||| || | ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
37069860 |
agcttggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagtgttgaa |
37069959 |
T |
|
| Q |
321 |
acaattgtgag |
331 |
Q |
| |
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|| | |||||| |
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| T |
37069960 |
accaatgtgag |
37069970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 5 - 331
Target Start/End: Original strand, 37079404 - 37079730
Alignment:
| Q |
5 |
aaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagtagc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||| ||| | ||||||||||||||| || |
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| T |
37079404 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagt |
37079503 |
T |
|
| Q |
105 |
ggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattg |
204 |
Q |
| |
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||||| || ||||| |||| ||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||||||||||| || |||||||||| |
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| T |
37079504 |
ggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattg |
37079603 |
T |
|
| Q |
205 |
tgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatgctgt |
304 |
Q |
| |
|
||||||| |||||||| | || |||||||||||||| || |||| ||||||||| || | ||||||||||||||||||||||||||||||||| || || |
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| T |
37079604 |
tgatgaatataatgaaaacatggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagt |
37079703 |
T |
|
| Q |
305 |
gattataagtgttgaaacaattgtgag |
331 |
Q |
| |
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||||||||| |||||||| | |||||| |
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| T |
37079704 |
gattataagggttgaaaccaatgtgag |
37079730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 36971718 - 36971668
Alignment:
| Q |
272 |
tggaacagcaaaacatgctgctactgatgctgtgattataagtgttgaaac |
322 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36971718 |
tggaacaccaaaacatgctgctactgatgcagtgattataagtgttgaaac |
36971668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 12493429 - 12493781
Alignment:
| Q |
1 |
ccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaag |
100 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||| |||||||||||||||||||| |
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| T |
12493429 |
ccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaagataacgaaatgagagcgattccaag |
12493528 |
T |
|
| Q |
101 |
tagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgat |
200 |
Q |
| |
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|||||||| || ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| || || ||| |
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| T |
12493529 |
aagcggcatgaccattttgagagtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgatagtagcactaatggaactgaacaacgat |
12493628 |
T |
|
| Q |
201 |
attgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgcttttccttctgattcacctggaacagcaaaacatgctgctactgatg |
300 |
Q |
| |
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|||||||||||||||||||| || || |||||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |
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| T |
12493629 |
attgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctactgaag |
12493728 |
T |
|
| Q |
301 |
ctgtgattataagtgttgaaacaattgtgaggttttctattctgtctttatat |
353 |
Q |
| |
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| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12493729 |
cagtgattataagtgttgaaacaattgtaaggttttctattctgtctttatat |
12493781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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