View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14730_low_1 (Length: 656)

Name: NF14730_low_1
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14730_low_1
NF14730_low_1
[»] chr1 (9 HSPs)
chr1 (11-656)||(28495590-28496232)
chr1 (11-138)||(36989340-36989467)
chr1 (11-137)||(12804511-12804637)
chr1 (11-137)||(42287117-42287243)
chr1 (11-137)||(4160377-4160503)
chr1 (11-137)||(12774937-12775063)
chr1 (365-424)||(31641897-31641956)
chr1 (11-137)||(50788819-50788945)
chr1 (11-139)||(31644056-31644184)
[»] chr8 (4 HSPs)
chr8 (11-137)||(5788723-5788849)
chr8 (361-425)||(5787996-5788060)
chr8 (11-77)||(33186735-33186801)
chr8 (367-422)||(33186981-33187036)
[»] chr7 (2 HSPs)
chr7 (13-137)||(40749392-40749516)
chr7 (11-119)||(44150818-44150926)
[»] chr2 (3 HSPs)
chr2 (11-140)||(42898298-42898427)
chr2 (11-139)||(40040789-40040917)
chr2 (11-137)||(38895857-38895983)
[»] chr4 (2 HSPs)
chr4 (11-139)||(22085504-22085632)
chr4 (11-137)||(30518148-30518274)


Alignment Details
Target: chr1 (Bit Score: 620; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 11 - 656
Target Start/End: Complemental strand, 28496232 - 28495590
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496232 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 28496133  T
Q  111 tgactgtggcaccctcttctcaaggtataatatttaatatactctccttttattcaccaatcttttgtttctgtgataaatcaataaatgcttctataat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28496132 tgactgtggcaccctcttctcaaggtataatatttaatatactctccttttattcaccaatcttttgtttctgtgataaatcaataaatgcttctttaat 28496033  T
Q  211 ttattcatattcatatttgtgacatgtacgaggtttttccaatcatgtatgtagtgttaggttttgaatttaatgctttctttaatggattatattttta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496032 ttattcatattcatatttgtgacatgtacgaggtttttccaatcatgtatgtagtgttaggttttgaatttaatgctttctttaatggattatattttta 28495933  T
Q  311 tgtgtctggtttaattttaagttttaacttaagagtgttgatattttgaacagaaaggatagtttcattacacatagagccttttgtgatgcattggcag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495932 tgtgtctggtttaattttaagttttaacttaagagtgttgatattttgaacagaaaggatagtttcattacacatagagccttttgtgatgcattggcag 28495833  T
Q  411 aagagagtgcaagagtaacttcagttacaacaacaaatctaaattttaagaatgaagaaggtagtgctatgatgaatccacattcacattcagaacatgg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28495832 aagagagtgcaagagtaacttcagttacaacaacaaatctaaattttaagaatgaagaaggtagtgctatgatgaatccacattcacattcacaacatgg 28495733  T
Q  511 tttatcacatggaatacttcaaaatataggtggaattccacatccacaatttggctcacatggatttcatcatgtagatttcaatggaattggaaacaat 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  28495732 tttatcacatggaatacttcaaaatataggtggaattccacatccacaatttggctcacatggatttcatcatgtagatttcaatggaattggaaac--- 28495636  T
Q  611 aacaacactatgattatggagcaacaaaggccaagtttatcacttt 656  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  28495635 aaaaacactatgattatggagcaacaaaggccaagtttatcacttt 28495590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 36989340 - 36989467
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    ||||||| |||||||||||||| || ||||| || |||||||| || ||||||||||||||||||||| | |||| |||||||||||| |||||||||||    
T  36989340 gtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatg 36989439  T
Q  111 tgactgtggcaccctcttctcaaggtat 138  Q
    ||||||||| ||| |||| || ||||||    
T  36989440 tgactgtggaaccatcttttccaggtat 36989467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 12804637 - 12804511
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    ||||||| ||||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||| | || || |||||||| || || || | |||    
T  12804637 gtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatg 12804538  T
Q  111 tgactgtggcaccctcttctcaaggta 137  Q
    |||||||||||| ||||||||||||||    
T  12804537 tgactgtggcactctcttctcaaggta 12804511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 42287117 - 42287243
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||||||||||||||||||||||||||| || || |||||||| || |||||||| |||||||| ||| | || || |||||||| |||||||| | |||    
T  42287117 gtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatg 42287216  T
Q  111 tgactgtggcaccctcttctcaaggta 137  Q
    ||| ||||||||||||||||| |||||    
T  42287217 tgattgtggcaccctcttctctaggta 42287243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 4160377 - 4160503
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||||||||||||||| ||||| |||||||| |||  ||||||||| || || ||||||||||||||| | ||||  ||||| || | ||| || || ||    
T  4160377 gtgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 4160476  T
Q  111 tgactgtggcaccctcttctcaaggta 137  Q
    ||||||||| |||||||||||||||||    
T  4160477 tgactgtggaaccctcttctcaaggta 4160503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 12774937 - 12775063
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    ||||||| || ||||| |||||||| ||||| || || ||||| || ||||||||||||||||||||| | ||||| |||||||| |  || || | |||    
T  12774937 gtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatg 12775036  T
Q  111 tgactgtggcaccctcttctcaaggta 137  Q
    |||||||||||| |||||||| |||||    
T  12775037 tgactgtggcactctcttctccaggta 12775063  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 31641956 - 31641897
Alignment:
Q  365 aaggatagtttcattacacatagagccttttgtgatgcattggcagaagagagtgcaaga 424  Q
    |||||||| ||||| || |||||||| ||||||||||||||||| ||||| |||||||||    
T  31641956 aaggatagcttcataactcatagagcattttgtgatgcattggctgaagaaagtgcaaga 31641897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 50788945 - 50788819
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||||||||| ||||| ||||| || || || || || ||||| || |||||||||||||| || ||| | || || ||||| || |||||||| |  ||    
T  50788945 gtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtg 50788846  T
Q  111 tgactgtggcaccctcttctcaaggta 137  Q
    |||||||||||| |||||||| |||||    
T  50788845 tgactgtggcactctcttctccaggta 50788819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 31644184 - 31644056
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    ||||||| || ||||||||||| || || || || |  ||||| || || |||||||||||||||||  | ||||| ||||||||  ||||||| |||||    
T  31644184 gtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatataaatg 31644085  T
Q  111 tgactgtggcaccctcttctcaaggtata 139  Q
    ||| ||||| ||||| || || |||||||    
T  31644084 tgattgtggtacccttttttccaggtata 31644056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 5788849 - 5788723
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    ||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||| | ||||| ||||| || |||||||| | |||    
T  5788849 gtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatg 5788750  T
Q  111 tgactgtggcaccctcttctcaaggta 137  Q
    ||||||||| |||||||||||||||||    
T  5788749 tgactgtggaaccctcttctcaaggta 5788723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 5788060 - 5787996
Alignment:
Q  361 cagaaaggatagtttcattacacatagagccttttgtgatgcattggcagaagagagtgcaagag 425  Q
    ||||| ||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  5788060 cagaagggacagtttcataacacatagagcattttgtgatgcattagcagaagagagtgcaagag 5787996  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 33186735 - 33186801
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctca 77  Q
    ||||||| |||||||||||||| |||||||| || |||||||| || ||||||||||||||||||||    
T  33186735 gtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctca 33186801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 33186981 - 33187036
Alignment:
Q  367 ggatagtttcattacacatagagccttttgtgatgcattggcagaagagagtgcaa 422  Q
    ||||||||| || ||||||||||| ||||||||||| |||||||| |||| |||||    
T  33186981 ggatagttttatcacacatagagctttttgtgatgcgttggcagaggagaatgcaa 33187036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 40749392 - 40749516
Alignment:
Q  13 gagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtg 112  Q
    |||||||| ||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||| || ||||    
T  40749392 gagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaatataagtgtg 40749491  T
Q  113 actgtggcaccctcttctcaaggta 137  Q
    | ||||| || ||||||||||||||    
T  40749492 attgtggtacactcttctcaaggta 40749516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 44150926 - 44150818
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||||||||| ||||||||||| || || || |||| |||||| || ||||| |||||||| |||||    ||||| |||||||| || |||||||||||    
T  44150926 gtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaatacaaatg 44150827  T
Q  111 tgactgtgg 119  Q
    ||| |||||    
T  44150826 tgattgtgg 44150818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 42898298 - 42898427
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||||||||||||||||||||| || || || || || |||||||| ||||| || |||||||||||  | ||||| ||||| ||||||||||||| |||    
T  42898298 gtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatg 42898397  T
Q  111 tgactgtggcaccctcttctcaaggtataa 140  Q
    ||||||||| ||||||||||||||||||||    
T  42898398 tgactgtggaaccctcttctcaaggtataa 42898427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 40040789 - 40040917
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||||||||||||||| ||||| || ||||| || ||||||||||| |||||||||||||| |||||||  || |  ||||| || | ||| |||| |||    
T  40040789 gtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaagagtacagatg 40040888  T
Q  111 tgactgtggcaccctcttctcaaggtata 139  Q
    ||| |||||||| || ||||| |||||||    
T  40040889 tgattgtggcacactattctccaggtata 40040917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 38895983 - 38895857
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||||||||||||||| ||||| || || || |||   ||||| || ||||| ||||||||||| ||  |||| || |||||||| ||||||||||||||    
T  38895983 gtgagaagaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatg 38895884  T
Q  111 tgactgtggcaccctcttctcaaggta 137  Q
    ||| ||||||||  |||| ||||||||    
T  38895883 tgattgtggcactatcttttcaaggta 38895857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 22085632 - 22085504
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||  || |  ||||| || ||||| ||||||||    
T  22085632 gtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatg 22085533  T
Q  111 tgactgtggcaccctcttctcaaggtata 139  Q
    ||| ||||||||  | ||||| |||||||    
T  22085532 tgattgtggcacaattttctccaggtata 22085504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 30518274 - 30518148
Alignment:
Q  11 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 110  Q
    |||| ||||||||||| ||||| || || || |||   ||||| || || || ||||||||||||||  |||||||||||||||| ||||||||||||||    
T  30518274 gtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatg 30518175  T
Q  111 tgactgtggcaccctcttctcaaggta 137  Q
    ||||||||| ||  |||| ||||||||    
T  30518174 tgactgtggaactatcttttcaaggta 30518148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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