View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_low_16 (Length: 297)
Name: NF14730_low_16
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_low_16 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 30622356 - 30622060
Alignment:
| Q |
1 |
atcctccacaaccatgcttgccttagctactctcctcccgaactctccgaatcaaatccaacaacattcgacaccttcgagatgcggaagctcttagacg |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30622356 |
atcctccacaaccatgcttgccttagccactctcctcccgaactctccgaatcaaatccaacaacattcgacaccttcgagatgcggaagctcttagacg |
30622257 |
T |
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| Q |
101 |
gtcacaatttggaagatcgcgactggctattcgggttgatgatacagagcggactattcaaccggcgggaagtcgacgggagggtgtttgtgaatcctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30622256 |
gtcacaatttggaagatcgcgactggctattcgggttgatgatacagagcggactattcaaccggcgggaagtcgacgggagggtgtttgtgaatcctga |
30622157 |
T |
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| Q |
201 |
ttataaccagtccatggagcaacagagggaaatgaccatgaaacgaattgcgtatttgttggatcgtggtgtttttcgtgggtggcttactggtgat |
297 |
Q |
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| T |
30622156 |
ttataaccagtccatggagcaacagagggaaatgaccatgaaacgaattgcgtatttgttggatcgtggtgtttttcgtgggtggcttactggtgat |
30622060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 22418606 - 22418327
Alignment:
| Q |
1 |
atcctccacaaccatgcttgccttagctactctcctcccgaactctccgaatcaaatccaacaacattcgacaccttcgagatgcggaagctcttagacg |
100 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||| |
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| T |
22418606 |
atcctccaccaccacgcttgccttagctactctcctcccgatctctccgaatcaaatccaacaacattcaa-accttcgaaatgtggaagctcttagacg |
22418508 |
T |
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| Q |
101 |
gtcacaatttggaagatcgcgactggctattcgggttgatgatacagagcggactattcaaccggcgggaagtcgacgggagggtgtttgtgaatcctga |
200 |
Q |
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| || ||| ||||||| |||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
22418507 |
gccataat----------------ggctatttgggttgatgatacagagcagactattcaaccgtcgggatgtcaacgggagggtgtttgtgaatcctga |
22418424 |
T |
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| Q |
201 |
ttataaccagtccatggagcaacagagggaaatgaccatgaaacgaattgcgtatttgttggatcgtggtgtttttcgtgggtggcttactggtgat |
297 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
22418423 |
ttataatcagtccatggagcaacagagggagatgaccatgaaacgaattgcgtatttgttggatcgtggtgtgtttcgtgggtggcttactagtgat |
22418327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 12813677 - 12813626
Alignment:
| Q |
246 |
aattgcgtatttgttggatcgtggtgtttttcgtgggtggcttactggtgat |
297 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12813677 |
aattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgat |
12813626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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