View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14730_low_19 (Length: 270)

Name: NF14730_low_19
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14730_low_19
NF14730_low_19
[»] chr7 (4 HSPs)
chr7 (83-159)||(33432581-33432657)
chr7 (87-159)||(33966831-33966903)
chr7 (26-67)||(42842132-42842173)
chr7 (221-257)||(33966979-33967015)
[»] chr4 (6 HSPs)
chr4 (26-74)||(6780906-6780954)
chr4 (26-74)||(6787552-6787600)
chr4 (26-82)||(7870191-7870247)
chr4 (26-82)||(7875133-7875189)
chr4 (9-67)||(53586083-53586141)
chr4 (26-54)||(56221690-56221718)
[»] chr3 (1 HSPs)
chr3 (26-70)||(29186804-29186848)
[»] chr2 (2 HSPs)
chr2 (26-74)||(25465583-25465632)
chr2 (26-74)||(25471076-25471125)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 33432657 - 33432581
Alignment:
Q  83 cttttttgtttggaaaaagagccggtttcttttgattacatagaatggatactcaggaacgaaatgtattctctccc 159  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||    
T  33432657 ctttttttgttggaaaaagagccggtttcttttgattacatagaatggataatcaggaacgaactgtatcctctccc 33432581  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 33966831 - 33966903
Alignment:
Q  87 tttgtttggaaaaagagccggtttcttttgattacatagaatggatactcaggaacgaaatgtattctctccc 159  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  33966831 tttgtttgaaaaaagagccgctttcttttgattacatagaaaggatactcaggaacgaaatgtattcactccc 33966903  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 42842173 - 42842132
Alignment:
Q  26 ttaataacatgctatatttcatatctataaatttgattatct 67  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  42842173 ttaataacatgctatatttcatatctgtaaatttgcttatct 42842132  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 33966979 - 33967015
Alignment:
Q  221 cgtttccaaaatttattccatattgctttagaattat 257  Q
    |||||||||||||||||| |||||||||| |||||||    
T  33966979 cgtttccaaaatttattctatattgcttttgaattat 33967015  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 6780906 - 6780954
Alignment:
Q  26 ttaataacatgctatatttcatatctataaatttgattatctgttaaaa 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6780906 ttaataacatgctatatttcatatctataaatttgattatctgttaaaa 6780954  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 6787552 - 6787600
Alignment:
Q  26 ttaataacatgctatatttcatatctataaatttgattatctgttaaaa 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6787552 ttaataacatgctatatttcatatctataaatttgattatctgttaaaa 6787600  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 7870247 - 7870191
Alignment:
Q  26 ttaataacatgctatatttcatatctataaatttgattatctgttaaaatctcttca 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  7870247 ttaataacatgctatatttcatatctataaatttggttatctgttaaaaactcttca 7870191  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 7875189 - 7875133
Alignment:
Q  26 ttaataacatgctatatttcatatctataaatttgattatctgttaaaatctcttca 82  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||    
T  7875189 ttaataacatgttatatttcatatctataaatttgattatttgttaaaaactcttca 7875133  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 53586083 - 53586141
Alignment:
Q  9 gaagtctattaatactgttaataacatgctatatttcatatctataaatttgattatct 67  Q
    |||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||    
T  53586083 gaagtcaattaatactgttaattacatgctatatttcatatctgtaaatttggttatct 53586141  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 56221718 - 56221690
Alignment:
Q  26 ttaataacatgctatatttcatatctata 54  Q
    |||||||||||||||||||||||||||||    
T  56221718 ttaataacatgctatatttcatatctata 56221690  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 29186848 - 29186804
Alignment:
Q  26 ttaataacatgctatatttcatatctataaatttgattatctgtt 70  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  29186848 ttaataacatgctatatttcatatctataaatttgattatttgtt 29186804  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 25465632 - 25465583
Alignment:
Q  26 ttaataacatgctatatttcatatctat-aaatttgattatctgttaaaa 74  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  25465632 ttaataacatgctatatttcatatctataaaatttggttatctgttaaaa 25465583  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 25471125 - 25471076
Alignment:
Q  26 ttaataacatgctatatttcatatctat-aaatttgattatctgttaaaa 74  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  25471125 ttaataacatgctatatttcatatctataaaatttggttatctgttaaaa 25471076  T

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