View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_low_22 (Length: 253)
Name: NF14730_low_22
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 739059 - 739282
Alignment:
| Q |
17 |
agttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgat |
116 |
Q |
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| T |
739059 |
agttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgat |
739158 |
T |
|
| Q |
117 |
agctaccatcataaccatcaagaaaactacagatctctctacaaatcccatgannnnnnnnnnnnnagcaaggaaattagcaaaacttcctcttgaggtg |
216 |
Q |
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| T |
739159 |
agctaccatcataaccatcaagaaaactacagatctctctacaaatcccatga----ctctctctcagcaaggaaattagcaaaacttcctcttgaggtg |
739254 |
T |
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| Q |
217 |
tgtactaatgagactcttcttctcactc |
244 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
739255 |
tgtactaatgagactcttcttttcactc |
739282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 47218895 - 47218784
Alignment:
| Q |
17 |
agttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaaccttgtgaacagctgcatttgaaaccttgat |
116 |
Q |
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||||||| |||||||||||||| ||||| || || |||||| | |||||||||| ||| || |||||||||| |||||||||| ||||| || || |
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| T |
47218895 |
agttcttggtagcagcccattttttgtagtcaatgttaccaagtgtagtccagccagcagaatcaccaaccttgtatacagctgcatatgaaatctgcat |
47218796 |
T |
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| Q |
117 |
agctaccatcat |
128 |
Q |
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| T |
47218795 |
agctaccatcat |
47218784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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