View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_low_26 (Length: 223)
Name: NF14730_low_26
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_low_26 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 36956548 - 36956395
Alignment:
| Q |
70 |
aatgattaacattttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatga |
169 |
Q |
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| T |
36956548 |
aatgaataacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatga |
36956449 |
T |
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| Q |
170 |
tggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaattagagc |
223 |
Q |
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| T |
36956448 |
tggaaggaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagc |
36956395 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 36935681 - 36935573
Alignment:
| Q |
83 |
ttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaaga |
182 |
Q |
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| T |
36935681 |
ttgatcaggtttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaaga |
36935582 |
T |
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| Q |
183 |
agcatatat |
191 |
Q |
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| T |
36935581 |
agcacatat |
36935573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 36948425 - 36948351
Alignment:
| Q |
117 |
aaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaagcatatat |
191 |
Q |
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| T |
36948425 |
aaaagaaaggggtagtaggaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatat |
36948351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 12493290 - 12493423
Alignment:
| Q |
84 |
tgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaa |
183 |
Q |
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| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
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| Q |
184 |
gcatatatnnnnnnntcacaaccgcaacaaaaat |
217 |
Q |
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| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaat |
12493423 |
T |
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