View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_low_3 (Length: 520)
Name: NF14730_low_3
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 9379658 - 9379953
Alignment:
| Q |
12 |
gaagaatatcagatgacttacctggatggggagttttgttccatggccttgttggtgatggaagcatcagtgtaagtatttctacttcttttaacaatac |
111 |
Q |
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| T |
9379658 |
gaagaatatcagatgacttacctggatggggagttttgttccatggccttgttggtgatggaagcatcagtgtaagtatttctacttcttttaacaatac |
9379757 |
T |
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| Q |
112 |
aannnnnnncttaagcaaaattgctttcaaatgggattctttcatttcaactatattattggcacaaaactatctattccatcctgcaaatctttattaa |
211 |
Q |
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| T |
9379758 |
aatttttttattaagcaaaattactttcaaatgggattctttcatttcaactatattattggcacaaaactatctattccatcctgcaaatctttattaa |
9379857 |
T |
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| Q |
212 |
aacaagaaaagacaaacatcgggacaaaaaccaactcatgtaagnnnnnnncatcaaactaatctaaagaaaggaagactatcttgattattaaaa |
307 |
Q |
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| T |
9379858 |
aacaagaaaagacaaacatggggacaaaaaccaactcatgtaagaaaaaaacatcaaactaatctaaagaaaggaagactatctagattattaaaa |
9379953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 9379957 - 9380027
Alignment:
| Q |
432 |
ttcatttgatacaacaattgaaaagcattgcctcatatgttctttaatctccattgaatagactaagatct |
502 |
Q |
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| T |
9379957 |
ttcatttgatacaacaattgaaaagcattgccctatatgttctttaatctccattgaatagactaagatct |
9380027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 55738573 - 55738641
Alignment:
| Q |
21 |
cagatgacttacctggatggggagttttgttccatggccttgttggtgatggaagcatcagtgtaagta |
89 |
Q |
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| T |
55738573 |
cagatgacattcccggatggggaacttttttccatggccttgttggtgatggaagtgtcagtgtaagta |
55738641 |
T |
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