View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_low_5 (Length: 460)
Name: NF14730_low_5
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 460
Target Start/End: Original strand, 6254125 - 6254576
Alignment:
| Q |
25 |
tctgctaacaatttcctttgccttttcgaatacttaatacatcattcaatcatca-----------------gaagcgttactcttttatcattgcctaa |
107 |
Q |
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| T |
6254125 |
tctgctaacaatttccattgccttttccaatccttaatacatcattcaatcatcatggttgatcgtcttgtggaagagttactctcttatcattgcctaa |
6254224 |
T |
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| Q |
108 |
ctggttaatannnnnnnnnnattcgtaatagataaataacctgagcagttttgtcgactgagttatttaacctaatttattggtttgcaggacctctgat |
207 |
Q |
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| T |
6254225 |
ctggttaatattttttttg-attcgtaatagctaaataacctaagcagttttgtcgactgaattatttaacctaatttattggtttgcaggacctctgat |
6254323 |
T |
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| Q |
208 |
ccgtaatccaactatggagatggacaaaatcatcaattccctgcgtgtgaagtacataacctacgctgtggaatatgagtttgattgtgttagttttaag |
307 |
Q |
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| T |
6254324 |
ccgtaatccaactacggagatggaacaaatcatcaattccctgcgtgtgaagtacataacctacgatgtggaatatgagtttgattgtgttagttttaag |
6254423 |
T |
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| Q |
308 |
tttcctannnnnnnattcattgtctttctgtcgcatgtttgtttcagtttaataatttgtcacgttatacttttatccagggtggtgtaatgattcccaa |
407 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6254424 |
tttcctcattttttattcattgtctttctgtcgcatgtttgtttcagtttaataatttgtcacgttatacttttatccacggtggtgtaatgattcccaa |
6254523 |
T |
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| Q |
408 |
ttgttttggatcatattttggaaatgagattggtcgttattccttccaatatc |
460 |
Q |
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| T |
6254524 |
ttgttttggatcagattttggaaatgagattggtcgttattctttccaatatc |
6254576 |
T |
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