View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_low_6 (Length: 445)
Name: NF14730_low_6
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 34658132 - 34658414
Alignment:
| Q |
1 |
tgacatcccaaaaagtatgtttaaataacacgcatattcattctatttatnnnnnnnnnnnnnnnnncatttataagttggagaaatttcactaatctcc |
100 |
Q |
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| T |
34658132 |
tgacatcccaaaaagtatgtttaaataacacacatattcattctatttataaaaataaaataaaaaacatttataagttggagaaattgcactaatcttc |
34658231 |
T |
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| Q |
101 |
catcaagtttgtttaaatgaacggcgttgggcaactcacttggttgagttaagggataaaagagttaaaaattcatatttcgaatcttgacaagggtgaa |
200 |
Q |
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| T |
34658232 |
cctcaaatttgtttaaatgaacggcgttgggtaactcacttggttgagttaaaggataaaagagttaaaaattcatatttcgaatcttgacaaggaagaa |
34658331 |
T |
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| Q |
201 |
aatactaacatgttctatt-nnnnnnnntaggagtgttcgttgaagagaatatttcaaatatgacaaggattttgtttggttt |
282 |
Q |
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| T |
34658332 |
aatactaacatattctattaaaaaaaaaaaggagtgttcgttgaagagaatatttcaattatgacaaggatgttgtttggttt |
34658414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 269 - 425
Target Start/End: Original strand, 34658454 - 34658611
Alignment:
| Q |
269 |
attttgtttggtttatttggttgaggatttcatgactcaagtgaactgtatttggttttgaggatttcatgactataatc-aaaattacttaaattttat |
367 |
Q |
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| T |
34658454 |
attttgtttggtttatttggttgaggatttcatgactcaagtgaactgtatttggttttgaggatttcatgactctaatcaaaaattacttaaattttat |
34658553 |
T |
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| Q |
368 |
cctaaaaagtgttcattttgaaactgttttatttgggatggtggtattatgggcagtg |
425 |
Q |
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| T |
34658554 |
cctaaaaagtgttcattttgaaactgttttatttgggatggtagtattatgggcagtg |
34658611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 18722199 - 18722282
Alignment:
| Q |
128 |
tgggcaactcacttggttgagttaagggataaaagagttaaaaattcatatttcgaatcttgacaagggtgaaaatactaacat |
211 |
Q |
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|||| |||||||||||||||| |||||||| ||||||||||| |||| || ||||| || |||||| |||||| ||||||| |
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| T |
18722199 |
tgggtaactcacttggttgagctaagggattaaagagttaaaggttcagggtttgaatcctggcaagggagaaaatgctaacat |
18722282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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