View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14730_low_8 (Length: 424)
Name: NF14730_low_8
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14730_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 280 - 406
Target Start/End: Original strand, 4074873 - 4074999
Alignment:
| Q |
280 |
cacaagttctccaaaatatggcttatagcacatatataaaacaatttaatttaaattgattttttgctatacgaataacttataatcttatacatcaaca |
379 |
Q |
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| T |
4074873 |
cacaagttctccaaaatatggcttatagcgcatatataaaacaatttaatttaaattgattttttgctatagaaataacttataatcttataaatcaaca |
4074972 |
T |
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| Q |
380 |
tttatcatgataaacacctgtcttata |
406 |
Q |
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| T |
4074973 |
tttatcatgataaacacctgtcttata |
4074999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 4074793 - 4074844
Alignment:
| Q |
200 |
atatgagttttgtcaaactgattatgagaacttataataaaagtttatgttg |
251 |
Q |
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| T |
4074793 |
atatgagttttgtcaaactgattatgagaacttataataaaagtttatgttg |
4074844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 37357213 - 37357356
Alignment:
| Q |
17 |
tgaacatgggtgagattgtgtaatggtggtggtgtgagctatgagagagaaacaaacagtggagggaatgagagaaatcgattaatagggaaagaaaatg |
116 |
Q |
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| T |
37357213 |
tgaacatgggtgagattgtgtaatggtggtggtgtgagctatgagagagaaacaaacagtggagggaatgagagaaatcgattaacagggaaagaaaatg |
37357312 |
T |
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| Q |
117 |
nnnnnnnnnnngaaggaaaaataccgtataaaatacggtggtgtctg |
163 |
Q |
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| T |
37357313 |
aaaaaaaaa---aaggaaaaatactgtataaaatacggtggtgtctg |
37357356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 25878231 - 25878283
Alignment:
| Q |
39 |
atggtggtggtgtgagctatgagagagaaacaaacagtggagggaatgagaga |
91 |
Q |
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| T |
25878231 |
atggtggtggtgtgagctatgtgagagaaacaaacagcggagggagtgagaga |
25878283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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