View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14730_low_9 (Length: 398)

Name: NF14730_low_9
Description: NF14730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14730_low_9
NF14730_low_9
[»] chr4 (11 HSPs)
chr4 (3-181)||(6787312-6787491)
chr4 (23-181)||(53585856-53586013)
chr4 (23-181)||(56221806-56221963)
chr4 (283-381)||(6787112-6787210)
chr4 (76-181)||(41156945-41157050)
chr4 (115-181)||(6780763-6780829)
chr4 (79-181)||(41157348-41157455)
chr4 (121-181)||(7875325-7875385)
chr4 (126-181)||(7871592-7871647)
chr4 (23-131)||(7870334-7870441)
chr4 (87-170)||(10592378-10592461)
[»] chr3 (5 HSPs)
chr3 (23-181)||(27751988-27752145)
chr3 (23-181)||(29186929-29187086)
chr3 (23-181)||(27756988-27757144)
chr3 (283-378)||(27752247-27752347)
chr3 (301-359)||(51993794-51993852)
[»] chr8 (6 HSPs)
chr8 (23-181)||(38972115-38972272)
chr8 (23-181)||(39003213-39003370)
chr8 (23-181)||(38984877-38985029)
chr8 (23-181)||(39015974-39016126)
chr8 (283-378)||(38972374-38972474)
chr8 (283-378)||(39003472-39003572)
[»] chr2 (4 HSPs)
chr2 (23-181)||(25465710-25465866)
chr2 (23-181)||(25471211-25471362)
chr2 (86-181)||(9282897-9282992)
chr2 (283-359)||(25465971-25466050)
[»] chr7 (1 HSPs)
chr7 (86-172)||(28059554-28059640)
[»] chr5 (1 HSPs)
chr5 (79-140)||(18344908-18344969)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 6787491 - 6787312
Alignment:
Q  3 gagagtgacttgagagagagtttgagagctcttctaccgccttactgaatgagcgtactttcagttct-ccagagtgtctaacataatgggatagttagc 101  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||    
T  6787491 gagagtgacttgagagagagtttgagagctcttatgccgccttactgaatgagcgtactttcaatttttccagagtgtctaacataatgggatagttagc 6787392  T
Q  102 ttatatactcatcagtggaggcagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6787391 ttatatactcatcaatggaggcagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 6787312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 53586013 - 53585856
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||  ||||| |||||||||| ||||||||||||||||||| ||||||    
T  53586013 tttgagagttcttctaccgccttactgattgagcgtactttcagtt-tccagtgtagctaacctaatgggataattagcttatatactcatcaatggagg 53585915  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53585914 cagggacctctcaaatgggctgactaataagaacggtccaacccatcacggtccgttca 53585856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 56221806 - 56221963
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||| ||  || || ||||| |||||||||||||||||||||||||||||||||||||    
T  56221806 tttgagagcttttctaccgccttactgattgagcgtacttttagttttcagga-tggctaacctaatgggatagttagcttatatactcatcagtggagg 56221904  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  56221905 cagggatctctcaaatggaccgactaataagaacggtccaacccatcacggtccgttca 56221963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 6787210 - 6787112
Alignment:
Q  283 caacaatctcccacttggattactttaattaaatattaaaagtaatataagaatggtagtagaaatatatcaaatataaatagtacttgtcatcaaagt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6787210 caacaatctcccacttggattactttaattaaatattaaaagtaatataagaatggtagtagaaatatatcaaatataaatagtacttgtcatcaaagt 6787112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 41157050 - 41156945
Alignment:
Q  76 gtgtctaacataatgggatagttagcttatatactcatcagtggaggcagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtc 175  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||     
T  41157050 gtgtctaacctaatgggatagttaggttatatactcatcagtggaggcagggacctctcaaatgggctgactaataagaacggtccaacctattacggtt 41156951  T
Q  176 cgttca 181  Q
    ||||||    
T  41156950 cgttca 41156945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 6780829 - 6780763
Alignment:
Q  115 agtggaggcagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6780829 agtggaggcagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 6780763  T

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Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 41157348 - 41157455
Alignment:
Q  79 tctaacataatgggatagttagcttatatactcatcagtgg----aggcagggacctctcaaatgggctgactaacaagaacggtccaa-cccatcacgg 173  Q
    |||||| ||||||||||||||| ||||||||||||||||||    |||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||    
T  41157348 tctaacctaatgggatagttagattatatactcatcagtggaggcaggcagggacctctcaaatgggctgactaataagaatggtccaaccccatcatgg 41157447  T
Q  174 tccgttca 181  Q
    ||||||||    
T  41157448 tccgttca 41157455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 7875325 - 7875385
Alignment:
Q  121 ggcagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||    
T  7875325 ggcagggacctctcaaatgggccgactaataagaacggtccaatccatcacgatccgttca 7875385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 7871592 - 7871647
Alignment:
Q  126 ggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||| |||||||||    
T  7871592 ggacctctcaaatgggccgactattaagaacggtccaacccatcacagtccgttca 7871647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 7870334 - 7870441
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    |||||||||||||||  | ||||||||| ||||||||||| || || | | | ||   |||| ||||| |||| ||||||||||||||||| ||||||||    
T  7870334 tttgagagctcttctgactccttactgattgagcgtacttgcaatttttc-gtgtagttaacctaatgagataattagcttatatactcattagtggagg 7870432  T
Q  123 cagggacct 131  Q
    |||||||||    
T  7870433 cagggacct 7870441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 10592378 - 10592461
Alignment:
Q  87 aatgggatagttagcttatatactcatcagtggaggcagggacctctcaaatgggctgactaacaagaacggtccaacccatca 170  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||| ||||    || ||||||| ||||||| | ||||||||||    
T  10592378 aatggaatagttagattatatactcatcagtggaggtagggaccactcattcaggttgactaataagaacgattcaacccatca 10592461  T

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Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 27751988 - 27752145
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| |||||  || ||||| ||||| |||||||||||||||||||||||||||||||    
T  27751988 tttgagagctcttctaccgccttactgattgagcgtactttccgtt-tccaggatggctaacctaatgagatagttagcttatatactcatcagtggagg 27752086  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    ||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  27752087 cagagacctctcaaatgggccgactaataaggacggtccaacccatcacggtccgttca 27752145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 29186929 - 29187086
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    ||||||||||||||| |||||||||| |  |||| | ||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||     
T  29186929 tttgagagctcttctgccgccttacttatcgagcattctttcagtt-tacagtgtggctaacataatgggatagttagcttatatactcatcagtggaga 29187027  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29187028 cagggacctctcaaatgggctgactaacaagaatggtccaacccatcacggtccgttca 29187086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 27756988 - 27757144
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||| ||||   || ||||| |||||||||||||||||||||||||||||||||||||    
T  27756988 tttgagagctcttcttccgccttactgattgagcgtactttccgtt-tccatgatggctaac-taatgggatagttagcttatatactcatcagtggagg 27757085  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  27757086 cagggacctctcaaatgggccgactaataagaacggtccaacccatcacagtccgttca 27757144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 27752247 - 27752347
Alignment:
Q  283 caacaatctcccacttggattactttaattaaatattaaaa--gtaatataagaatggtagtagaaatatatcaaatat---aaatagtacttgtcatca 377  Q
    |||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| |||||| ||||||||||||    |||||||||||||||||    
T  27752247 caacaatcacccacttggattactttaattaaatattaaaaagataatataagaatggttgtagaagtatatcaaatatttataatagtacttgtcatca 27752346  T
Q  378 a 378  Q
    |    
T  27752347 a 27752347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 51993852 - 51993794
Alignment:
Q  301 attactttaattaaatattaaaag-taatataagaatggtagtagaaatatatcaaatat 359  Q
    |||||||||||||| ||||||||  ||||||||||||| |||||||||||||||||||||    
T  51993852 attactttaattaa-tattaaaatataatataagaatgatagtagaaatatatcaaatat 51993794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 38972115 - 38972272
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    ||||||||||||||| || ||||| ||| ||||||||||||||||| ||  || || ||||| |||||||||||||||||||||||||||||||||||||    
T  38972115 tttgagagctcttctgccaccttattgattgagcgtactttcagttttcggga-tggctaacctaatgggatagttagcttatatactcatcagtggagg 38972213  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  38972214 cagggacctctcaaatgggccgactaataagaacggttcaacccatcacggtccgttca 38972272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 39003213 - 39003370
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    ||||||||||||||| || ||||| ||| ||||||||||||||||| ||  || || ||||| |||||||||||||||||||||||||||||||||||||    
T  39003213 tttgagagctcttctgccaccttattgattgagcgtactttcagttttcggga-tggctaacctaatgggatagttagcttatatactcatcagtggagg 39003311  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  39003312 cagggacctctcaaatgggccgactaataagaacggttcaacccatcacggtccgttca 39003370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 38984877 - 38985029
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    ||||||||||||||| ||||||    || ||||||||||||||||| ||  || || ||||| |||||||| ||||||||||||||||||| ||||||||    
T  38984877 tttgagagctcttctgccgcct----gattgagcgtactttcagttttcagga-tggctaacctaatgggagagttagcttatatactcattagtggagg 38984971  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||| ||||||||||||| | |||||| ||||||||||||||||||||||||| |||||    
T  38984972 cagg-acctctcaaatggaccgactaataagaacggtccaacccatcacggtctgttca 38985029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 39015974 - 39016126
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    ||||||||||||||| ||||||    || ||||||||||||||||| ||  || || ||||| |||||||| ||||||||||||||||||| ||||||||    
T  39015974 tttgagagctcttctgccgcct----gattgagcgtactttcagttttcagga-tggctaacctaatgggagagttagcttatatactcattagtggagg 39016068  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    |||| ||||||||||||| | |||||| ||||||||||||||||||||||||| |||||    
T  39016069 cagg-acctctcaaatggaccgactaataagaacggtccaacccatcacggtctgttca 39016126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 38972374 - 38972474
Alignment:
Q  283 caacaatctcccacttggattactttaattaaatattaaaa--gtaatataagaatggtagtagaaatatatcaaatat---aaatagtacttgtcatca 377  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||| ||||||||||||    |||||||||||||||||    
T  38972374 caacaatctcccacttggattactttaattaaatattaaaaagataatataagaatggttgtagaagtatatcaaatatttataatagtacttgtcatca 38972473  T
Q  378 a 378  Q
    |    
T  38972474 a 38972474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 39003472 - 39003572
Alignment:
Q  283 caacaatctcccacttggattactttaattaaatattaaaa--gtaatataagaatggtagtagaaatatatcaaatat---aaatagtacttgtcatca 377  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||| ||||||||||||    |||||||||||||||||    
T  39003472 caacaatctcccacttggattactttaattaaatattaaaaagataatataagaatggttgtagaagtatatcaaatatttataatagtacttgtcatca 39003571  T
Q  378 a 378  Q
    |    
T  39003572 a 39003572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 25465710 - 25465866
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    ||||||||||||||| |||| ||||||| ||||| | ||||||||| | ||| ||||||||| | ||||||||||||| ||||||||||| |||||||||    
T  25465710 tttgagagctcttctgccgc-ttactgattgagcattctttcagtt-tacagtgtgtctaacttgatgggatagttagattatatactcaccagtggagg 25465807  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25465808 cagggacctctcaaatgggctgactaataagaacggtccaacccatcacggtccgttca 25465866  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 25471211 - 25471362
Alignment:
Q  23 tttgagagctcttctaccgccttactgaatgagcgtactttcagttctccagagtgtctaacataatgggatagttagcttatatactcatcagtggagg 122  Q
    ||||||||||||||| |||| ||||||| ||||| | ||||||||| | ||| |||||||||    ||  |||||||| ||||||||||| |||||||||    
T  25471211 tttgagagctcttctgccgc-ttactgattgagcattctttcagtt-tacagtgtgtctaac----tgatatagttagattatatactcagcagtggagg 25471304  T
Q  123 cagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  25471305 cagggacctctcaaatgggctgactaataagaacggtccaa-ccatcatggtccgttca 25471362  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 9282897 - 9282992
Alignment:
Q  86 taatgggatagttagcttatatactcatcagtggaggcagggacctctcaaatgggctgactaacaagaacggtccaacccatcacggtccgttca 181  Q
    ||||| |||| |||| ||||||| ||||||||||||||| |  |||||||||||| |||||||| |||||||||||||||||||||| ||||||||    
T  9282897 taatgagataattagtttatataatcatcagtggaggcatgatcctctcaaatggactgactaataagaacggtccaacccatcacgatccgttca 9282992  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 25465971 - 25466050
Alignment:
Q  283 caacaatctcccacttggattactttaattaaa-tattaaaa--gtaatataagaatggtagtagaaatatatcaaatat 359  Q
    ||||||||||||||||||||||||||||||||| | | ||||  ||||| ||||||||||||||||| ||||||||||||    
T  25465971 caacaatctcccacttggattactttaattaaaatgtcaaaaaggtaatgtaagaatggtagtagaagtatatcaaatat 25466050  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 28059554 - 28059640
Alignment:
Q  86 taatgggatagttagcttatatactcatcagtggaggcagggacctctcaaatgggctgactaacaagaacggtccaacccatcacg 172  Q
    ||||||||||||||| |||||| ||||| || ||||||| |||||||||||||| | ||||||| ||||||||  ||| ||||||||    
T  28059554 taatgggatagttagattatatgctcattaggggaggcaaggacctctcaaatgagttgactaataagaacggctcaatccatcacg 28059640  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 18344908 - 18344969
Alignment:
Q  79 tctaacataatgggatagttagcttatatactcatcagtggaggcagggacctctcaaatgg 140  Q
    |||||| |||| |||||||||| |||||||||| |||||||||||||||||| |||||||||    
T  18344908 tctaacctaatcggatagttagattatatactcgtcagtggaggcagggacccctcaaatgg 18344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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