View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14731_low_1 (Length: 913)
Name: NF14731_low_1
Description: NF14731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14731_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 18695307 - 18695522
Alignment:
| Q |
18 |
ggtcaaagcatcgatctttccataactcaatgacccagaaacgtttcgatcataatgcaattcattctcaaactttgcgttacatgcttgatctaaatgt |
117 |
Q |
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| T |
18695307 |
ggtcaaagcatcgatctttccataactcaatgacccagaaacgtttcgatcataatgcaattcattctcaaactttgcgttacatgcttgatctaaatgt |
18695406 |
T |
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| Q |
118 |
acccagaatttaccatcttcaccaacgttgaactcgtttacaccctttgggaaaattcccattggaagaccatggttgaatagaacctcgtagatggatg |
217 |
Q |
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| T |
18695407 |
acccagaatttaccatcttcaccaacgttgaactcgtttacaccctttgggaaaattcccattggaagaccatggttgaatagaacctcgtagatggatg |
18695506 |
T |
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| Q |
218 |
ttgcattggaacttgt |
233 |
Q |
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| T |
18695507 |
ttgcattggaacttgt |
18695522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 634 - 897
Target Start/End: Original strand, 18695919 - 18696191
Alignment:
| Q |
634 |
gggaaatcattttgttgtacaaaatgtcaaaatttagtaaagtattttattcatattttcaattatagatgatgaaaatagaggaattttttaaccgaag |
733 |
Q |
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| T |
18695919 |
gggaaatcattttgttgtacaaaatgtcaaaatttagtaaagtattttattcatattttcaattatagatgattaaaatagaggaattttttaaccgaag |
18696018 |
T |
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| Q |
734 |
atgctctgactaatccttcgagtctacta-gaatcataacaagtaaaag-tttttctaaagagatttaacattattgtatttt-ggagttgaac------ |
824 |
Q |
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| T |
18696019 |
attctccgactaatccttcgagtctactatgaatcataataagtaaaagttttttttaaagagatttaacattattgtattttcggagttgaacttgaat |
18696118 |
T |
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| Q |
825 |
ttgaatttgtgacatttagttaagctcaaaaagannnnnnnnaccatttcatacaaatatttttgggtaatat |
897 |
Q |
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| T |
18696119 |
ttgaatttgtaacatttagttgaactcaaaaagattttttttactatttcatacaaatgtttttgggtaatat |
18696191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 18695756 - 18695844
Alignment:
| Q |
470 |
gggttgacagcttgaatacagaagggattaggcaaagaatgatcaattattggtatttggtggtgactggtgattggtgtgtgggcctc |
558 |
Q |
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| T |
18695756 |
gggttgacagcttgaatacagaagggattaggcaaagaatgatcaattattggtatttggtggtgaccagtgattggtgtgtgggcctc |
18695844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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