View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14731_low_2 (Length: 407)
Name: NF14731_low_2
Description: NF14731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14731_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 118 - 403
Target Start/End: Original strand, 32871429 - 32871713
Alignment:
| Q |
118 |
tacaaaagagggcaaagcccaatcgaaacatgttgtttagtaaaataataaacttatctgtttactctcgatagagaaatagatgtaacaagactattat |
217 |
Q |
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| T |
32871429 |
tacaaaagagggcaaagcccaatcgaaacatgttgtttagtaaa-taataaacctatctgtttactctcgatagagaaatagatgtaacaagactattat |
32871527 |
T |
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| Q |
218 |
tttannnnnnngtgtaacataaccttaaaaacaatgaaaaatgaatagatgtagtatcaagtattaataagctaaactcatatctgattatacgacacat |
317 |
Q |
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| T |
32871528 |
tttatttttttgtgtaagataaccttaaaaacaatgaaaaatgaatagatgtagtatcaagtattaataagctaaactcatatctgattatacgacacat |
32871627 |
T |
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| Q |
318 |
aaggcaaaatatattgcctgatttaattgggaatgtagaatcttgaattatataatcttcatttatttgccatatatattcttgga |
403 |
Q |
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| T |
32871628 |
aaggcaaaatatattgcctgatttaattgggaatgtagaatcttgaattatataatcttcatttatttgccatatatttttttgga |
32871713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 32871321 - 32871394
Alignment:
| Q |
32 |
taattgaaagatatagttggaaagnnnnnnngtgaaattcatttcaaaataatttcttcttcttctaaataata |
105 |
Q |
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| T |
32871321 |
taattgaaagatatagttggaaagaaaaaatgtgaaattcatttcaaaataattttttcttcttctaaataata |
32871394 |
T |
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