View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14731_low_3 (Length: 357)
Name: NF14731_low_3
Description: NF14731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14731_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 30388194 - 30388388
Alignment:
| Q |
1 |
ataaaaattgggatcttaatcttggataaggattaaaagtccaatcccttaagaaagaaacagtatcaccaagttctctgttccaagaattctccattta |
100 |
Q |
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| T |
30388194 |
ataaaaattgggatcttaatcttggataaggattaaaagtccaatcccttaagaaagaaacagtatcaccaagttctctgttccaagaattctccattta |
30388293 |
T |
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| Q |
101 |
atgtcaaaaaacattaccgtcctctaatatctctccctcaacgtcacaccaccgcttttcttaattatccacttccataatttccacgctgtaac |
195 |
Q |
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| T |
30388294 |
atgtcaaaaaacattaccgtcctctaatatctctccctcaacgtcacaccaccgcttttcttaattatccacttccataatttccacgctgtaac |
30388388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 30388429 - 30388524
Alignment:
| Q |
239 |
cacgtaacaccgaatgttagaagaacaaacacgcactacatgtgtctatatatataaacctcattccccccaaacaaaaccaaacaacacaacgtc |
334 |
Q |
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| T |
30388429 |
cacgtaacaccgaatgttagaagaacaaacacgcactacatgtgtctatatatataaacctcattcccctcaaacaaaaccaaacaacacaacgtc |
30388524 |
T |
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