View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14731_low_4 (Length: 290)
Name: NF14731_low_4
Description: NF14731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14731_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 15276475 - 15276200
Alignment:
| Q |
1 |
gacaagctcatggttgaaatattcgtttgtacaacagcaaattcgacagggtgtctatgttaccggttttatagtgtaatgttattgnnnnnnnnnnnnn |
100 |
Q |
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| T |
15276475 |
gacaagctcatggttgaaataatcgtttgtacaacagcaaattcgacagggtgtctatgttaccagttttatagtgtaatgttattgttttttattttat |
15276376 |
T |
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| Q |
101 |
nnnnnnnnnnatatatatgatgttgaataataaaaatgtggttgttcaataaaaaatggccaccaatctaagaagtctcacttgcaattgtgatgttttg |
200 |
Q |
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| T |
15276375 |
ttatttttttatatatatgatgttgaataataaaaatttggttgttcaataaaaaatggccaccaatctaagaagtctcacttgcaattgtgatgttttg |
15276276 |
T |
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| Q |
201 |
tgttgattcattaaaaattcagatttattctcattcatatttttaagatccttttgattttgttacgcagatggtg |
276 |
Q |
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| T |
15276275 |
tgttgattcattaaaaattcagatttattctcattcatatttttaagatccttttgattttgttacgcagatggtg |
15276200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 15264433 - 15264382
Alignment:
| Q |
225 |
ttattctcattcatatttttaagatccttttgattttgttacgcagatggtg |
276 |
Q |
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| T |
15264433 |
ttattctcattcatatttttaagatccttttgattttgttatacagatggtg |
15264382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 479269 - 479339
Alignment:
| Q |
191 |
tgatgttttgtgttgattcattaa-aaattcagatttattctcattcatatttttaagatccttttgattt |
260 |
Q |
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| T |
479269 |
tgatgttttgtgttgattcattttgaaatccagttatattctcattcatatttttaagatccttttgattt |
479339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15265968 - 15265882
Alignment:
| Q |
1 |
gacaagctcatggttgaaatattcgtttgtacaacagcaaattcgacagggtgtctatgttaccggttttatagtgtaatgttattg |
87 |
Q |
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| T |
15265968 |
gacaaactcatggttgaaatcatcgtttgttcaacagcagatacgacaagatctctctgctgccagttttctagtgtaatgttattg |
15265882 |
T |
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