View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14731_low_5 (Length: 257)
Name: NF14731_low_5
Description: NF14731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14731_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 21113749 - 21113956
Alignment:
| Q |
22 |
aatttcaaaccaccaaaattcaaccccatagcaccccctccaacagcccagcaaaattgccacaaaagaccccatacctacttcaca------------- |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| ||||| |
|
|
| T |
21113749 |
aatttcaaaccaccaaaattcaaccccatagcaccgcctccaacagcccagcaaagttgccacaaaagaccccagacctacctcacaaaacaggctacac |
21113848 |
T |
|
| Q |
109 |
-acacagcaactggtgctggactgtcatgacagcagcgctgccagtgaacagccagcactgctagaccaaaaaacaacaagaggaggcagcagctcctta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21113849 |
aacacagcaactggtgctggactgtcatgacagcagcgctgccagtgaacagccagcaccgctagaccaaaaaacaacaagaggaggcagcagctcctta |
21113948 |
T |
|
| Q |
208 |
acgcgcta |
215 |
Q |
| |
|
||| |||| |
|
|
| T |
21113949 |
acgtgcta |
21113956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 256
Target Start/End: Complemental strand, 1160881 - 1160749
Alignment:
| Q |
122 |
tgctggactgtcatgacagcagcgctgccagtgaacagccagcactgctagaccaaaaaacaacaagaggaggcagcagctccttaacgcgctaagcaat |
221 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||| ||| || |||||||||| |||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
1160881 |
tgctggactgtcatgacagcatcgctgccagtgagcagccaacaccactggaccaaaaaa--acaaaaggaggcagcagctcattaacgtgctaagcaat |
1160784 |
T |
|
| Q |
222 |
tccgtggactccaactccactcataaaacatacac |
256 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
1160783 |
cccgcggactccaactccactcataaaacatacac |
1160749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 1161016 - 1160927
Alignment:
| Q |
1 |
tgagctatggctctgaaatccaatttcaaaccaccaaaattcaaccccatagcaccccctccaacagcccagcaaaattgccacaaaaga |
90 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||| || |||||||| |||||| ||||| |
|
|
| T |
1161016 |
tgagttatggctctgaaatccaattatgaaccatcaaaattcaaccccttagcaccgcctccaatagaccagcaaagctgccaccaaaga |
1160927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 21977589 - 21977528
Alignment:
| Q |
191 |
gaggcagcagctccttaacgcgctaagcaattccgtggactccaactccactcataaaacat |
252 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
21977589 |
gaggcagcagctccttagcgcatcaagcaatcccgaggactccaactccactcatagaacat |
21977528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University