View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14732_high_5 (Length: 413)
Name: NF14732_high_5
Description: NF14732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14732_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 4634666 - 4634271
Alignment:
| Q |
1 |
ttacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgccatatatattgnnnnnnnnnnnnaaatgtgcgtgagtcctatatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
4634666 |
ttacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgccatatatattggtttttttt---aaatgtgtgtgagtcctatatgt |
4634570 |
T |
|
| Q |
101 |
tgaggtgtgttgatgaaggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatgataaaaatgggtttatg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634569 |
tgaggtgtgttgatgacggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatgataaaaatgggtttatg |
4634470 |
T |
|
| Q |
201 |
aaatacactattgataatagttcaatgtaaactgnnnnnnntttgagtaggcagattatacaaactaaattttgtcgacaagtagttgtagatagtgatc |
300 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4634469 |
aaatacactattgataatagttcaatgtaaattgaaaaaaatttgagtaggcagattatacaaactaaattttgttgacaagtagttgtagatagtgatc |
4634370 |
T |
|
| Q |
301 |
ctatgatagaggttgtttgagtggcttggatttctgactatgctattgggtaagagttcattttccagagattttaaatgttcagtttatctgtaattg |
399 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634369 |
ctatgatagaggtggtttgagtggcttggatttctgactatgctattgggtaagagttcattttccagagattttaaatgttcagtttatctgtaattg |
4634271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 21838175 - 21838357
Alignment:
| Q |
1 |
ttacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgccatatatattgnnnnnnnnnnnnaaatgtgcgtgagtcctatatgt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |
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| T |
21838175 |
ttacagggcatagtttgtcttggcttggttgattaggatatgaaacttggttgccttatatattggtttttttttt-aaatgtgtgtgagtcctatatgt |
21838273 |
T |
|
| Q |
101 |
tgaggtgtgttgatgaaggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatga |
184 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
21838274 |
tgaggtgtgttgatgaaggaagaaatcaaaagtatattgtgagaattagagttgggtttgaatatgctttagttgagtttatga |
21838357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 358
Target Start/End: Complemental strand, 660741 - 660632
Alignment:
| Q |
248 |
taggcagattatacaaactaaattttgtcgacaagtagttgtagatagtgatcctatgatagaggttgtttgagtggcttggatttctgactatgctatt |
347 |
Q |
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|||| ||||||||| ||| ||||||||| |||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||| ||| |
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| T |
660741 |
taggaagattataccaaccaaattttgttgacaggtagttgtagatagtgatcctgtgata-aggtggtttgagtggcttggatttctgaatatgccatt |
660643 |
T |
|
| Q |
348 |
gggtaagagtt |
358 |
Q |
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||||||||||| |
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| T |
660642 |
gggtaagagtt |
660632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17732937 - 17732998
Alignment:
| Q |
1 |
ttacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgccatatata |
62 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
17732937 |
ttacagggaatagtttgtcttggcttggttgattaggatataaaacttgggtgccttatata |
17732998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 7762137 - 7762169
Alignment:
| Q |
8 |
gaatagtttgtcttggcttggttgattaggata |
40 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
7762137 |
gaatagtttgtcttggcttggctgattaggata |
7762169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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