View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14732_high_7 (Length: 213)

Name: NF14732_high_7
Description: NF14732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14732_high_7
NF14732_high_7
[»] chr3 (7 HSPs)
chr3 (20-196)||(24982044-24982220)
chr3 (20-196)||(24497267-24497443)
chr3 (20-196)||(25085036-25085212)
chr3 (20-196)||(24923468-24923644)
chr3 (20-196)||(31825565-31825741)
chr3 (20-196)||(24919894-24920070)
chr3 (25-196)||(21584610-21584781)
[»] chr7 (4 HSPs)
chr7 (20-196)||(10575385-10575561)
chr7 (28-191)||(39954861-39955024)
chr7 (52-196)||(354402-354547)
chr7 (88-196)||(10580785-10580893)
[»] chr2 (1 HSPs)
chr2 (28-170)||(41027596-41027738)
[»] chr8 (1 HSPs)
chr8 (28-196)||(14261048-14261216)
[»] chr4 (3 HSPs)
chr4 (22-176)||(22898571-22898725)
chr4 (22-176)||(22950239-22950393)
chr4 (52-191)||(53328717-53328856)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 24982220 - 24982044
Alignment:
Q  20 agagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982220 agagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgac 24982121  T
Q  120 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24982120 attctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttc 24982044  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 24497267 - 24497443
Alignment:
Q  20 agagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  24497267 agagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcac 24497366  T
Q  120 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24497367 attttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttc 24497443  T

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Target: chr3; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 25085212 - 25085036
Alignment:
Q  20 agagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgac 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  25085212 agagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcac 25085113  T
Q  120 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  25085112 attctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttc 25085036  T

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Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 24923468 - 24923644
Alignment:
Q  20 agagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgac 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| || |||||||| |||||    
T  24923468 agagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgac 24923567  T
Q  120 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923568 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 24923644  T

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Target: chr3; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 31825565 - 31825741
Alignment:
Q  20 agagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgac 119  Q
    ||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  31825565 agagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgac 31825664  T
Q  120 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||    
T  31825665 attctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttc 31825741  T

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Target: chr3; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 24919894 - 24920070
Alignment:
Q  20 agagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgac 119  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||| || |||||||| |||||    
T  24919894 agagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgac 24919993  T
Q  120 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  24919994 attctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttc 24920070  T

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Target: chr3; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 21584610 - 21584781
Alignment:
Q  25 gttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattct 124  Q
    ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||| || ||||||||||| ||||| |||||||| || |||||||    
T  21584610 gttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattct 21584709  T
Q  125 ccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    ||||||| ||||| |  || ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21584710 ccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 10575561 - 10575385
Alignment:
Q  20 agagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgac 119  Q
    |||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| || ||||||||||| ||||| ||||| |  || ||    
T  10575561 agagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttataac 10575462  T
Q  120 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  10575461 attctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttc 10575385  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 39954861 - 39955024
Alignment:
Q  28 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 127  Q
    ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| || |||||||| |    
T  39954861 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaa 39954960  T
Q  128 agaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 191  Q
      |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||| ||||||||    
T  39954961 gaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 354547 - 354402
Alignment:
Q  52 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 151  Q
    ||||||||||| || || | |||||||||||| || ||||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  152 tttcttcataga-tcaaaccactgattctcttaacaccacctcttc 196  Q
    |||| ||||||| | ||||||||||| ||||| |||||||||||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttc 354402  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 10580893 - 10580785
Alignment:
Q  88 tgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 187  Q
    ||||||||||| ||||| |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||| ||||    
T  10580893 tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac 10580794  T
Q  188 cacctcttc 196  Q
    || ||||||    
T  10580793 caactcttc 10580785  T

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Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 41027738 - 41027596
Alignment:
Q  28 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 127  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  128 agaagatcttcaagacacctctggtttcttcatagatcaaacc 170  Q
    | ||||||||||| || || |  || ||||| |||||||||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc 41027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 14261048 - 14261216
Alignment:
Q  28 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 127  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || ||||| || ||||| ||||| |  || ||||||||||    
T  14261048 cttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctcca 14261147  T
Q  128 agaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 196  Q
    |||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  14261148 agaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 22898725 - 22898571
Alignment:
Q  22 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 121  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  122 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 176  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 22950393 - 22950239
Alignment:
Q  22 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 121  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  122 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 176  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 53328856 - 53328717
Alignment:
Q  52 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 151  Q
    ||||||||||| || ||||||||||| |  | ||| ||||| |||||||| || |||||||| || |||||||| |  |||||||| |  || || |  |    
T  53328856 acaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgacagcatcacgaatcacattctcaagaaagatcttgagaacgccacgag 53328757  T
Q  152 tttcttcatagatcaaaccactgattctcttaacaccacc 191  Q
    ||||||||||||| || |||||||| | ||| ||||||||    
T  53328756 tttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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