View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14732_low_1 (Length: 696)
Name: NF14732_low_1
Description: NF14732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14732_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 21 - 680
Target Start/End: Complemental strand, 49313859 - 49313200
Alignment:
| Q |
21 |
agatcctaggcttcgtttcaatatttctgaccaatcttcaacgaaaaatattatgcctaaagtggaatatgctgaaggagttatctcaagaaagcgaaag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49313859 |
agatcctaggcttcgtttcaatatttctgaccaatcttcaacgaaaaatattatgcctaaagtggaatatgctgaaggagttatctcaagaaagcgaaag |
49313760 |
T |
|
| Q |
121 |
acagttgaagagtcttccttggatgctactgctcccaaaagacttacaaggtctttggaaaattctcagcgcaatagcagagaggaacaaactatggatg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
49313759 |
acagttgaagagtcttccttggatgctactgctcccaaaagacttacaaggtctttggaaaattctcagcacaatagcagagaggaacaaactatggatg |
49313660 |
T |
|
| Q |
221 |
caaaaggtggttggcttgcagaaaatacggtcgctagtaatttgaccacgacaaataatggaaatgagcaggcacctgttataagcagctgtgccgcaac |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49313659 |
caaaaggtggttggcttgcagaaaatacggtcgctagtaatttgaccacgacaagtaatggaaatgagcaggcacctgttataagcagctgtgccgcaac |
49313560 |
T |
|
| Q |
321 |
ccccttacttgctttatttaatagtgaatctgtaaattcaaccatgttactaaataagcttttagagatacatcagagattagcggaagtcaagagacca |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
49313559 |
ccccttacttgctttatttaatagtgaatctgtaaattcaaccatgttactaaataagcttttagatatacatcagagattagcggaagtcaagagacca |
49313460 |
T |
|
| Q |
421 |
attaattttgctacaagtgcactgcatttaacaaactcaaattcagcgaggggaacaaattcaaccgtgaatactagtccgacaatgacttctggtgttc |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
49313459 |
attaattttgctacaagtgcactgcatttaacaaactcaaattcagcgaggggaacaaattcaactgtgaatactagtccgacaatgacttctggtgttc |
49313360 |
T |
|
| Q |
521 |
cgcaaaattctattggaatgcttccaacttcatcaccaacaacttccatggtaaaatccttttatgagattatttcgcttaagtaaacacatcacaagcc |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49313359 |
cgcaaaattctattggaatgcttccaacttcatcaccaacaacttccatggtaaaatccttttatgagattatttcgcttaagtaaacacatcacaagcc |
49313260 |
T |
|
| Q |
621 |
aattcttgatattcttcatgggctgtggtgttatcttccaattatctagtactttcttct |
680 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49313259 |
aattcttgatattcttcatgggctgtggtgttatcttccaattatctagtactttcttct |
49313200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 38 - 680
Target Start/End: Complemental strand, 29915510 - 29914868
Alignment:
| Q |
38 |
tcaatatttctgaccaatcttcaacgaaaaatattatgcctaaagtggaatatgctgaaggagttatctcaagaaagcgaaagacagttgaagagtcttc |
137 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||||| |||| |
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|
| T |
29915510 |
tcaatatttttgaccaatcttcaacgaaaaataatatgactaaagtggaatatgctgaaggagttaccttaagaaagcgaaagatagttgaagagccttc |
29915411 |
T |
|
| Q |
138 |
cttggatgctactgctcccaaaagacttacaaggtctttggaaaattctcagcgcaatagcagagaggaacaaactatggatgcaaaaggtggttggctt |
237 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29915410 |
cttggatgttactgctcccaaaagacttacaaggtctttggaaaattcctagcacaatagaagagaggaacaaactatggatgcaaaaggtggttggctt |
29915311 |
T |
|
| Q |
238 |
gcagaaaatacggtcgctagtaatttgaccacgacaaataatggaaatgagcaggcacctgttataagcagctgtgccgcaacccccttacttgctttat |
337 |
Q |
| |
|
| ||||||||||||| || |||||||||| || |||| |||||||||||||||| ||| ||||||||| || ||||||||| |||||||||||||||||| |
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|
| T |
29915310 |
gtagaaaatacggtcactcgtaatttgactacaacaagtaatggaaatgagcagacacatgttataagtagttgtgccgcagcccccttacttgctttat |
29915211 |
T |
|
| Q |
338 |
ttaatagtgaatctgtaaattcaaccatgttactaaataagcttttagagatacatcagagattagcggaagtcaagagaccaattaattttgctacaag |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
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|
| T |
29915210 |
ttaatagtgaatctgtaaattcaaccatgttactaaataaccttttagagatacatcagagattagaggaagtcaatagaccaattaattctgctacaag |
29915111 |
T |
|
| Q |
438 |
tgcactgcatttaacaaactcaaattcagcgaggggaacaaattcaaccgtgaatactagtccgacaatgacttctggtgttccgcaaaattctattgga |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
29915110 |
tgcactgcatttaacaaactcaaattcagcgaggggaacaaattcaactatgaatactggtccgacaatgacttctggtgttccacaaaattctattgga |
29915011 |
T |
|
| Q |
538 |
atgcttccaacttcatcaccaacaacttccatggtaaaatccttttatgagattatttcgcttaagtaaacacatcacaagccaattcttgatattcttc |
637 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
29915010 |
atgcttgcagcttcatcaccaacaacttccatggtaaaatccttttatgagattattttgcttaagtaaacgcatcacaagccaattcttgatattcttc |
29914911 |
T |
|
| Q |
638 |
atgggctgtggtgttatcttccaattatctagtactttcttct |
680 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29914910 |
ataggctgtggtgttatcttccaattatctagtaatttcttct |
29914868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 6661644 - 6661466
Alignment:
| Q |
73 |
atgcctaaagtggaatatgctgaaggagttatctcaagaaagcgaaagacagttgaagagtcttccttggatgctactgctcccaaaagacttacaaggt |
172 |
Q |
| |
|
||||||| ||||||||||| || | |||| ||||||||||||| |||||| ||||| ||| |||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
6661644 |
atgcctagagtggaatatggtggaagagtaatctcaagaaagcaaaagactgttgaggagccttcattggatgctactgctcccaaaagacttagaaggt |
6661545 |
T |
|
| Q |
173 |
ctttggaaaattctcagcgcaatagcagagaggaacaaactatggatgcaaaaggtggttggcttgcagaaaatacggt |
251 |
Q |
| |
|
||||||||||||| ||| ||||| ||| |||||| | |||||| || ||||||||||||| ||| |||||||||||| |
|
|
| T |
6661544 |
ctttggaaaattccgagcacaataccagggaggaaagagctatggctggaaaaggtggttggtttgaagaaaatacggt |
6661466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 461 - 659
Target Start/End: Complemental strand, 6661208 - 6661010
Alignment:
| Q |
461 |
attcagcgaggggaacaaattcaaccgtgaatactagtccgacaatgacttctggtgttccgcaaaattctattggaatgcttccaacttcatcaccaac |
560 |
Q |
| |
|
|||||||||||||||| || |||| || || ||| |||| |||||||| | ||| || |||||| |||| ||||||| |||||| ||||||||||| | |
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|
| T |
6661208 |
attcagcgaggggaacggatgcaactgttaacactggtccagcaatgactgccggtcttacgcaaagttctgttggaatacttccagcttcatcaccagc |
6661109 |
T |
|
| Q |
561 |
aacttccatggtaaaatccttttatgagattatttcgcttaagtaaacacatcacaagccaattcttgatattcttcatgggctgtggtgttatcttcc |
659 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| |||||| |||| ||| ||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
6661108 |
aacttccatggtaaattccttttatgagattatttctcttaactaaacaaatcataagttaattcttgatattctccagtggctttggtgttatcttcc |
6661010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 19290326 - 19290411
Alignment:
| Q |
79 |
aaagtggaatatgctgaaggagttatctcaagaaagcgaaagacagttgaagagtcttccttggatgctactgctcccaaaagactt |
165 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| | ||| ||||||||| | | ||||||||| ||||||||||||||||| |
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|
| T |
19290326 |
aaagtggaatatgctgaaagagttatcttaagaaagcatatgaccgttgaagagccgtaattggatgct-ctgctcccaaaagactt |
19290411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 569
Target Start/End: Original strand, 19290703 - 19290760
Alignment:
| Q |
512 |
ctggtgttccgcaaaattctattggaatgcttccaacttcatcaccaacaacttccat |
569 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
19290703 |
ctggtcttccgcaaagttctgttggaatgcttccagcttcatcaccagcaacttccat |
19290760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 271 - 394
Target Start/End: Original strand, 19290539 - 19290662
Alignment:
| Q |
271 |
acaaataatggaaatgagcaggcacctgttataagcagctgtgccgcaacccccttacttgctttatttaatagtgaatctgtaaattcaaccatgttac |
370 |
Q |
| |
|
|||| |||||||||||||||| || | |||| ||| ||| | |||||||| ||||||| | |||||| || ||| || | ||||| |||||||||||| |
|
|
| T |
19290539 |
acaagtaatggaaatgagcagacatccgttacaagtagcagcgccgcaactcccttacccgatttattgaaaagtagatgtataaatccaaccatgttac |
19290638 |
T |
|
| Q |
371 |
taaataagcttttagagatacatc |
394 |
Q |
| |
|
||||||||||| | ||| |||||| |
|
|
| T |
19290639 |
taaataagcttctggagctacatc |
19290662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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