View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14732_low_3 (Length: 469)
Name: NF14732_low_3
Description: NF14732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14732_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 19857467 - 19857848
Alignment:
| Q |
16 |
caagcaagcccacctggtgtaagccagaaaaggaaagcaagaacaaagagaaagaagcaaagtgcagtttggaaagtgagagtgaatggatgaaagtaaa |
115 |
Q |
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| T |
19857467 |
caagcaaacccacctggtgtaagccagaaaaggaaagcaagaacaaagagaaagaagcaaagtgcagtttggaaagtgagagtgaatggatgaaagtaaa |
19857566 |
T |
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| Q |
116 |
caaggtcagggaaaagaagaagatgaaattctggagacatggttgtttctttcttgaagatgagaaataagaaaggttaggttgcggatgaaatgtgaaa |
215 |
Q |
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| T |
19857567 |
caaggtcagggaaaagaagaagatgaaattctggagacatggttgtttctttcttgaagatgagaaataagaaaggttaggttgcggatgaaatgtgaaa |
19857666 |
T |
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| Q |
216 |
gacgaagaatgttggcggggttagttactagttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaaaggaatatactcac |
315 |
Q |
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| T |
19857667 |
gacgaagagtgttggcggggttagttactggttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaaaggaatatactcac |
19857766 |
T |
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| Q |
316 |
tccatcagaaaataaaggaggaaaactttatgagtaattataaagttaatggaaatgtgacagacagtgttttattactatg |
397 |
Q |
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| T |
19857767 |
tccatcagaaaataaaggaggaaaactttacgagtaattataaagttaatggaaatgtgacagagaggcttttattactatg |
19857848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 19857886 - 19857954
Alignment:
| Q |
400 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttggagtaactgaggtctctgct |
468 |
Q |
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| T |
19857886 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttggagtaactgaggtctgtgct |
19857954 |
T |
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