View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14732_low_4 (Length: 413)
Name: NF14732_low_4
Description: NF14732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14732_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 23576153 - 23576479
Alignment:
| Q |
1 |
ttgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttg |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23576153 |
ttgccagaagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaaccgaaggtgatggttttgtctttg |
23576252 |
T |
|
| Q |
101 |
gatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
23576253 |
gatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggactatggaaaacacaacagcttgccggtaagcctgc |
23576352 |
T |
|
| Q |
201 |
cggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattcttctagtgcattgtttggcatgt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
23576353 |
tggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctcctagtgcattgtttggaatgt |
23576452 |
T |
|
| Q |
301 |
taatgagaattacagaatcgtggctaa |
327 |
Q |
| |
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| |||||||||||||||||| |||||| |
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| T |
23576453 |
ttatgagaattacagaatcgcggctaa |
23576479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 23595723 - 23596001
Alignment:
| Q |
1 |
ttgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23595723 |
ttgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttttctttg |
23595822 |
T |
|
| Q |
101 |
gatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
23595823 |
gatttccaacaagatttggaatgatggctgcttagtttaaagcctttatagatgcaattggtggtctctggaaaacgcaacagcttgcagggaagcctgc |
23595922 |
T |
|
| Q |
201 |
cggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctt |
279 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||| | |||||||||||| |
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|
| T |
23595923 |
cggaatcttctacagcatcagttcccaaggcgatggccaagagactacaacggaagagcctttagtggatcatattctt |
23596001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 23604645 - 23604923
Alignment:
| Q |
1 |
ttgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23604645 |
ttgccataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttttctttg |
23604744 |
T |
|
| Q |
101 |
gatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
23604745 |
gatttccaacaagatttggaatgatggctgcttagtttaaagcctttatagatgcaattggtggtctctggaaaacgcaacagcttgcagggaagcctgc |
23604844 |
T |
|
| Q |
201 |
cggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctt |
279 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||| | |||||||||||| |
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| T |
23604845 |
cggaatcttctacagcatcagttcccaaggcgatggccaagagactacaacggaagagcctttagtggatcatattctt |
23604923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 23590474 - 23590728
Alignment:
| Q |
13 |
gtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaacaa |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||| | |||||| ||||| || |||| ||||||||||||||||||||||||||||||| |
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|
| T |
23590474 |
gtacttggaaagatgagagcaccacccaag--tgatgtaccaattactacccccaatgagctttctgagggtgatggttttgtctttggatttccaacaa |
23590571 |
T |
|
| Q |
113 |
gatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttcta |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
23590572 |
gatttggaatgatggctgctcaatttaaagcctttctagatgcaactggtggtctttggaaaacacaacagcttgtagggaagcctgccagaatcttcta |
23590671 |
T |
|
| Q |
213 |
cagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcga |
269 |
Q |
| |
|
|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
23590672 |
caacactagttcccaaggcggtggacaagagactacagcgtaagagcctttactcga |
23590728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 23607657 - 23607731
Alignment:
| Q |
325 |
taaacatagtttattactatagctgtacttgtacctcacacctgtaatgtttttaagaaagtgttccttcaattt |
399 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23607657 |
taaacatagtttattactatagttgtacttgtacctcacacctgtaatgtttttaagaaagtgttccttcaattt |
23607731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 23564535 - 23564476
Alignment:
| Q |
144 |
ctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccgg |
203 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23564535 |
ctttctagaagaaactgtaggtctatggaaaacaggacagcttgcagggaagcctgccgg |
23564476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 34339516 - 34339765
Alignment:
| Q |
10 |
gaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaa |
109 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| |||| || || |||||||| |||| |||||||||||||||||||| || |||| |
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|
| T |
34339516 |
gaggtgcttggaaagatgagtgcaccacccaagagtgatgtaccactcatcacaccaaatgaactgtctgagggtgatggttttgtctttggcttcccaa |
34339615 |
T |
|
| Q |
110 |
caagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatctt |
209 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | |||||| ||||| ||||||||| ||||||||||||||||| |
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|
| T |
34339616 |
caagatttggaatgatggctgctcaattcaaagcttttcttgatgctactggtggtttgtggaaagcacaatcgcttgcaggcaagcctgccggaatctt |
34339715 |
T |
|
| Q |
210 |
ctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagc |
259 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||||||||||| |
|
|
| T |
34339716 |
ctacagcactggttctcaaggtggaggacaagagactacagcgtaagagc |
34339765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 249
Target Start/End: Complemental strand, 2649524 - 2649383
Alignment:
| Q |
108 |
aacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatc |
207 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||| | ||| ||||||| | |||||| ||||| | |||||||| |||||||| || ||| |
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|
| T |
2649524 |
aacaagatttggaatgatggctactcaattcaaagcatttatggatacaactggagacctatggtgcacacagaaacttgcaggaaagcctgctggcatc |
2649425 |
T |
|
| Q |
208 |
ttctacagcaccagttcccaaggcggtggccaagagactaca |
249 |
Q |
| |
|
|| |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
2649424 |
ttttacagcactgcttgtcaaggaggtggccaagaaactaca |
2649383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 2645735 - 2645619
Alignment:
| Q |
84 |
tgatggttttgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacag |
183 |
Q |
| |
|
|||||||||| | ||||| |||||| |||||| |||||||||| ||||||| || |||| ||| | ||||||||||| || ||||||| | |||| |
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|
| T |
2645735 |
tgatggttttttgtttggttttccagcaagatatggaatgatgtctgctcaattcaaagtattttttgatgcaactggaagtttatggaacaaacaaaca |
2645636 |
T |
|
| Q |
184 |
cttgcagggaagcctgc |
200 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
2645635 |
cttgcaggaaagcctgc |
2645619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 36461617 - 36461849
Alignment:
| Q |
17 |
ttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaacaagatt |
116 |
Q |
| |
|
|||| |||||| ||| ||| || ||||||||||| ||||| ||||| || ||| ||| |||| | ||||||||| | |||| || || |||||||| |
|
|
| T |
36461617 |
ttgggaagatgggaggacctccaaagagtgatgtgccaattattacacctgatgcgctacctgaggctgatggtttgttgcttggcttcccgacaagatt |
36461716 |
T |
|
| Q |
117 |
tggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttctacagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||||||||| |||||| || || |||||||| |||||||| |||||||| |||||| |
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|
| T |
36461717 |
tggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatggcgtactcaggcacttgcaggaaagcctgcaggaatcttttacagc |
36461816 |
T |
|
| Q |
217 |
accagttcccaaggcggtggccaagagactaca |
249 |
Q |
| |
|
|| |||| || || || || |||||||||||| |
|
|
| T |
36461817 |
actggttctcagggaggaggacaagagactaca |
36461849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 36455339 - 36455400
Alignment:
| Q |
110 |
caagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatgg |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||| |
|
|
| T |
36455339 |
caagatttggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatgg |
36455400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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