View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14732_low_6 (Length: 268)
Name: NF14732_low_6
Description: NF14732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14732_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 28341684 - 28341930
Alignment:
| Q |
17 |
cttcatttgactcaatagatcttctgccacatgtgatttcaagtgcaacaacaccaaaactataaacatcagattctttacttgatttccctgttgtaac |
116 |
Q |
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| T |
28341684 |
cttcatttgactcaatagatcttctaccacatgtgatttcaagtgcaacaacaccaaaactataaacatcagattctttacttgatttccctgttgtaac |
28341783 |
T |
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| Q |
117 |
acattcaggtgctaagtatcccattgtgcctgccaaaacagttgtttgagaaccaagttcatgatctactagtcttgcaagaccaaaatcaccaagtttt |
216 |
Q |
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| T |
28341784 |
acattcaggtgctaagtatcccattgtgcctgccaaaacagttgtttgagaaccaagttcatgatctactagtcttgcaagaccaaaatcaccaagttta |
28341883 |
T |
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| Q |
217 |
gcattgaaatttgcatctaacattacattactcgacttaatatctct |
263 |
Q |
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| T |
28341884 |
gcattgaaatttgcatctaacattacattacttgacttaatatctct |
28341930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 93 - 263
Target Start/End: Original strand, 28336286 - 28336455
Alignment:
| Q |
93 |
tttacttgatttccctgttgtaacacattcaggtgctaagtatcccattgtgcctgccaaaacagttgtttgagaaccaagttcatgatctactagtctt |
192 |
Q |
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| T |
28336286 |
tttacttgacttccctgttgtaacacattctggtgctaagtatcccattgttcctgccaaaacagttgtatgataaccaagttcatgatctactagtcat |
28336385 |
T |
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| Q |
193 |
gcaagaccaaaatcaccaagttttgcattgaaatttgcatctaacattacattactcgacttaatatctct |
263 |
Q |
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| T |
28336386 |
gcaagaccaaaatcaccaagtttggcattg-aatttgcatctaacattacattgcttgacttaatatctct |
28336455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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