View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14732_low_9 (Length: 203)
Name: NF14732_low_9
Description: NF14732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14732_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 23423180 - 23423009
Alignment:
| Q |
18 |
gaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaaccaacaaagtttgtttttg |
117 |
Q |
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| T |
23423180 |
gaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaacaaagtttgtttttg |
23423081 |
T |
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| Q |
118 |
aacaagttaccattttgttaacttcttgatgcaaatagggcatagagtgtttaactgtgagtttcatctgtg |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
23423080 |
aacaagttaccattttgttaacttcttgatgcaaatagggtatagagtgtttaactgtgagtttcatttgtg |
23423009 |
T |
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Target: chr8; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 549448 - 549619
Alignment:
| Q |
18 |
gaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaaccaacaaagtttgtttttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549448 |
gaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcacttgagaaaagatcaaaaaccaaaccaacaaagtttgtttttg |
549547 |
T |
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| Q |
118 |
aacaagttaccattttgttaacttcttgatgcaaatagggcatagagtgtttaactgtgagtttcatctgtg |
189 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
549548 |
aacaagttacgattttgttaacttcttgatgcaaatagggtatagagtgtttaactgtgagtttcatttgtg |
549619 |
T |
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