View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14733_high_4 (Length: 398)
Name: NF14733_high_4
Description: NF14733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14733_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 40212830 - 40212463
Alignment:
| Q |
19 |
atttttccctttaaataacacaaggagttgctaatcacatatacactcatccattcagaagggtacgtggactattggaagacatgtagaacgtgtgtct |
118 |
Q |
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| T |
40212830 |
atttttccctttaaataacacaaggatttgctaatcacatatacactcatccattcagaagggtacgtggactattggaagacatgtagaacgtgtgtct |
40212731 |
T |
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| Q |
119 |
gtgt--attcccattgtcaccgactcaccgtggctgctttctagccaaactcgtatgatgagcctcattttctataacttattttggcagccaaaattta |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40212730 |
gtgtgtattcccattgtcaccgactcaccgtggctgctttctagccaaactcgtatgatgagcctcattttctataacttattttggcacccaaaattta |
40212631 |
T |
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| Q |
217 |
tcaaaattggtcatacctaaatctatatagtatactagtaannnnnnnnatttaaataaagagagattaatttatcaaatcatgtgcacctaagtaatta |
316 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40212630 |
tcacaattggtcacacctaaatctatatagtatactagtaa-tttttttatttaaataaaaagagattaatttatcaaatcatgtgcacctaagtaatta |
40212532 |
T |
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| Q |
317 |
acttattgtaac-nnnnnnnngtaattaatttatcgcttttggtctcacttacacgcatacagtattat |
384 |
Q |
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|||||||||||| |||||||||||||||| ||||||| |||||||| ||||||| |||||| |
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| T |
40212531 |
acttattgtaacaaaaaaaaagtaattaatttatcgcatttggtcacacttacatgcatacaatattat |
40212463 |
T |
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