View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14733_high_6 (Length: 380)

Name: NF14733_high_6
Description: NF14733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14733_high_6
NF14733_high_6
[»] chr2 (5 HSPs)
chr2 (174-372)||(29919316-29919512)
chr2 (1-144)||(14273818-14273963)
chr2 (34-145)||(35877979-35878093)
chr2 (34-145)||(36725181-36725295)
chr2 (34-144)||(35885468-35885581)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-114)||(4039-4152)
[»] chr8 (9 HSPs)
chr8 (1-114)||(7788647-7788760)
chr8 (1-114)||(15834662-15834775)
chr8 (1-114)||(24095487-24095600)
chr8 (5-114)||(31574805-31574914)
chr8 (34-144)||(20047767-20047879)
chr8 (34-145)||(12768257-12768371)
chr8 (34-145)||(42711792-42711906)
chr8 (34-145)||(20030755-20030868)
chr8 (41-114)||(989194-989267)
[»] chr5 (4 HSPs)
chr5 (1-114)||(26653360-26653473)
chr5 (1-114)||(26924945-26925058)
chr5 (5-114)||(42731965-42732074)
chr5 (41-144)||(11017572-11017677)
[»] chr3 (5 HSPs)
chr3 (1-145)||(7783321-7783467)
chr3 (34-146)||(13327788-13327903)
chr3 (34-145)||(23487686-23487800)
chr3 (41-114)||(35125888-35125961)
chr3 (35-114)||(4307405-4307483)
[»] chr6 (4 HSPs)
chr6 (41-144)||(30636831-30636936)
chr6 (35-145)||(8668388-8668501)
chr6 (34-144)||(17511720-17511832)
chr6 (1-56)||(12173969-12174024)
[»] chr1 (4 HSPs)
chr1 (5-66)||(5377824-5377885)
chr1 (16-144)||(26905582-26905714)
chr1 (15-66)||(21634156-21634207)
chr1 (35-114)||(29029483-29029562)
[»] scaffold0021 (1 HSPs)
scaffold0021 (34-114)||(124562-124641)
[»] chr7 (1 HSPs)
chr7 (34-144)||(28344770-28344883)
[»] scaffold0206 (1 HSPs)
scaffold0206 (34-145)||(2685-2798)
[»] chr4 (2 HSPs)
chr4 (41-144)||(28070842-28070948)
chr4 (77-114)||(26331423-26331460)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 174 - 372
Target Start/End: Original strand, 29919316 - 29919512
Alignment:
Q  174 aaatagaaaactagtgtttttcctttaattacatagtcaaaatggattttccaatcataatatctcaagagnnnnnnnntagcaaacaacgcaagtgtat 273  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||        |||||| ||| |||||||  |    
T  29919316 aaatagaaaactagtgtttttcctttaatcacatagtcaaaatgggttttccaatcataaaatctcaagagaaaaaa--tagcaaccaatgcaagtgcct 29919413  T
Q  274 cattaaaacgtatcattatcaatggggggtttttccctcaagtatgatcattgaggctttgacataaaagcgctttctgagttacacctctaattcgag 372  Q
    | ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  29919414 cgttaaaacgtatcattatcaattgggggtttttccctcaagtatgatcattcaggctttgacataaaagcgctttctgagttacacatctaattcgag 29919512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 14273818 - 14273963
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaag 100  Q
    |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||   || ||| |||| ||| |||||||||||||||    
T  14273818 ttgttatatatctaatactctaatcttattagactaacatttaccaagaaccttcttgagtatatatacttatttaagttgcaggattaaattttaaaag 14273917  T
Q  101 ggtcacaactcaaa--tacttacttgtgactatttcatccacttca 144  Q
    |||||||| | |||    ||| |||||||||||||| |||||||||    
T  14273918 ggtcacaatttaaaccccctttcttgtgactatttcttccacttca 14273963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 35877979 - 35878093
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgact 129  Q
    |||||||||||||||||  |||||||||| |||   |||||  |||||||| ||||||||| ||||||||||||| |||||      ||| |||||||||    
T  35877979 ctaacatttaccaagaattttcttgagtacataaacttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaaccccccctttcttgtgact 35878077  T
Q  130 atttcatccacttcaa 145  Q
    ||||| ||||||||||    
T  35878078 atttcttccacttcaa 35878093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 36725181 - 36725295
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgact 129  Q
    |||||||||||||||||  |||||||||| |||   |||||  |||||||| ||||||||| ||||||||||||| |||||      ||| |||||||||    
T  36725181 ctaacatttaccaagaattttcttgagtacataaacttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaaccccccctttcttgtgact 36725279  T
Q  130 atttcatccacttcaa 145  Q
    ||||| ||||||||||    
T  36725280 atttcttccacttcaa 36725295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 35885468 - 35885581
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgact 129  Q
    |||||||||||||||||  |||||||||| |||   |||||  |||||||| ||||||||| ||||||||||||| |||||      ||| |||||||||    
T  35885468 ctaacatttaccaagaattttcttgagtacataaacttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaaccccccctttcttgtgact 35885566  T
Q  130 atttcatccacttca 144  Q
    ||||| |||||||||    
T  35885567 atttcttccacttca 35885581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4039 - 4152
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaag 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||   |||||| |||| ||| | |||||||||||||    
T  4039 ttgttatatatctaatactctaatcttgtttgactaacatttaccaagaaacttcttgagtatatatacttgtttaagttgcaggactaaattttaaaag 4138  T
Q  101 ggtcacaactcaaa 114  Q
    |||||||| |||||    
T  4139 ggtcacaattcaaa 4152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 7788760 - 7788647
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaag 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||   |||||| |||| ||| | |||||||||||||    
T  7788760 ttgttatatatctaatactctaatcttgtttgactaacatttaccaagaaacttcttgagtatatatacttgtttaagttgcaggactaaattttaaaag 7788661  T
Q  101 ggtcacaactcaaa 114  Q
    |||||||| |||||    
T  7788660 ggtcacaattcaaa 7788647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 15834662 - 15834775
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaag 100  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||||||||   || ||| |||||||| | |||||||||||||    
T  15834662 ttgttatatatataatactctaatcttgttagactaacatttaccaagagccttcttgagtatataaacttatttaagtttcaggaataaattttaaaag 15834761  T
Q  101 ggtcacaactcaaa 114  Q
    | |||||| |||||    
T  15834762 gttcacaattcaaa 15834775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 24095600 - 24095487
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaag 100  Q
    |||||||||||||||| |||||||  |||| || ||||||||||| ||||||||||||||||||||   || ||| |||| ||| | |||||||||||||    
T  24095600 ttgttatatatctaattctctaatcatgttagaataacatttacccagaaccttcttgagtatataaacttatttaagttgcaggactaaattttaaaag 24095501  T
Q  101 ggtcacaactcaaa 114  Q
    |||||||| |||||    
T  24095500 ggtcacaattcaaa 24095487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 31574914 - 31574805
Alignment:
Q  5 tatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtc 104  Q
    |||| ||| |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||   || ||| |||| ||| | |||||||||||||||||    
T  31574914 tataaatcaaatattctaatcttgttagactaacatttaccaagaactttcttgagtatatatacttatttaagttgcaggactaaattttaaaagggtc 31574815  T
Q  105 acaactcaaa 114  Q
    |||| |||||    
T  31574814 acaattcaaa 31574805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 20047767 - 20047879
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa---tacttacttgtgacta 130  Q
    |||||||||||||||||  ||||||||||||||   |||||  |||||||| ||||||||| ||||||||||||| |||||   |  || ||||||||||    
T  20047767 ctaacatttaccaagaattttcttgagtatataaagttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaaccctcatttcttgtgacta 20047865  T
Q  131 tttcatccacttca 144  Q
    |||| |||||||||    
T  20047866 tttcttccacttca 20047879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 12768257 - 12768371
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgact 129  Q
    |||||||||||||||||  |||||||||| |||   |||||  |||||||| ||||||||| ||||||||||||| |||||      ||| |||||||||    
T  12768257 ctaacatttaccaagaattttcttgagtacataaacttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaaccccccctttcttgtgact 12768355  T
Q  130 atttcatccacttcaa 145  Q
    ||||| ||||||||||    
T  12768356 atttcttccacttcaa 12768371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 42711906 - 42711792
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgact 129  Q
    |||||||||||||||||  |||||||||| |||   |||||  |||||||| ||||||||| ||||||||||||| |||||      ||| |||||||||    
T  42711906 ctaacatttaccaagaattttcttgagtacataaacttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaaccccccctttcttgtgact 42711808  T
Q  130 atttcatccacttcaa 145  Q
    ||||| ||||||||||    
T  42711807 atttcttccacttcaa 42711792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 20030755 - 20030868
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaatac---ttacttgtgacta 130  Q
    |||||||||||||||||  || |||||||||||   ||| || |||||||| ||||||||| ||| ||||||||| |||||  |   || ||||||||||    
T  20030755 ctaacatttaccaagaattttattgagtatataaagttg-ttaagtttcaggattaaatttaaaaggggtcacaattcaaacccccatttcttgtgacta 20030853  T
Q  131 tttcatccacttcaa 145  Q
    |||| ||||||||||    
T  20030854 tttcttccacttcaa 20030868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 989194 - 989267
Alignment:
Q  41 ttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa 114  Q
    ||||||||||| ||||||||||||||   || ||| ||||| || | ||| ||||||||||||||||| |||||    
T  989194 ttaccaagaactttcttgagtatataaacttatttaagttttaggaataatttttaaaagggtcacaattcaaa 989267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 26653360 - 26653473
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaag 100  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||   || ||| |||| ||| | |||||||||||||    
T  26653360 ttgttatatatctaatactctaatcttgttagactaacatttaccaagaaccttcttgagtatatatacttatttaagttgcaggactaaattttaaaag 26653459  T
Q  101 ggtcacaactcaaa 114  Q
    |||||||| |||||    
T  26653460 ggtcacaattcaaa 26653473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 26924945 - 26925058
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaag 100  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||   || ||| |||| ||| | |||||||||||||    
T  26924945 ttgttatatatctaatactctaatcttgttagactaacatttaccaagaaccttcttgagtatatatacttatttaagttgcaggactaaattttaaaag 26925044  T
Q  101 ggtcacaactcaaa 114  Q
    |||||||| |||||    
T  26925045 ggtcacaattcaaa 26925058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 42732074 - 42731965
Alignment:
Q  5 tatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtc 104  Q
    |||| ||| |||| |||||| ||||| |||||||||||||||||||  ||||||||||||||   || ||| |||| ||| | |||||||||||||||||    
T  42732074 tataaatcaaatattctaatcttgttagactaacatttaccaagaattttcttgagtatatatacttatttaagttgcaggactaaattttaaaagggtc 42731975  T
Q  105 acaactcaaa 114  Q
    |||| |||||    
T  42731974 acaattcaaa 42731965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 11017677 - 11017572
Alignment:
Q  41 ttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaatac--ttacttgtgactatttcatcc 138  Q
    |||| |||||| |||||||||| |||   || ||| |||||||| | ||| ||||||||||||||||| |||||  |  || |||||||||||||| |||    
T  11017677 ttactaagaactttcttgagtagataaacttatttaagtttcaggactaatttttaaaagggtcacaattcaaaccccttttcttgtgactatttcttcc 11017578  T
Q  139 acttca 144  Q
    ||||||    
T  11017577 acttca 11017572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 7783467 - 7783321
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaag 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||| |   || ||| |||| ||| | |||||||||||||    
T  7783467 ttgttatatatctaatactctaatcttgttagactaacatttaccaagaatcttcttgagcatacatacttatttaagttgcaggactaaattttaaaag 7783368  T
Q  101 ggtcacaactcaaa-tactta-cttgtgactatttcatccacttcaa 145  Q
    ||||| || |||||   |||| |||||||||||||| ||||||||||    
T  7783367 ggtcataattcaaaccccttatcttgtgactatttcttccacttcaa 7783321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 13327903 - 13327788
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgact 129  Q
    |||||||||||||||||  ||||||||||||||   |||||  |||||||| ||||||||| ||||||||||||| |||||      ||| |||||||||    
T  13327903 ctaacatttaccaagaattttcttgagtatataaagttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaaccccccctttcttgtgact 13327805  T
Q  130 atttcatccacttcaaa 146  Q
    ||||| |||||||||||    
T  13327804 atttcttccacttcaaa 13327788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 23487686 - 23487800
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgact 129  Q
    |||||||||||||||||  |||||||||| |||   |||||  |||||||| ||||||||| ||||||||||||| |||||      ||| |||||||||    
T  23487686 ctaacatttaccaagaattttcttgagtacataaacttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaaccccccctttcttgtgact 23487784  T
Q  130 atttcatccacttcaa 145  Q
    ||||| ||||||||||    
T  23487785 atttcttccacttcaa 23487800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 35125888 - 35125961
Alignment:
Q  41 ttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa 114  Q
    ||||||||||| ||||||||||||||   || ||| ||||| |||| ||| ||||||||||||||||| |||||    
T  35125888 ttaccaagaactttcttgagtatataaacttatttaagtttgagaaataatttttaaaagggtcacaattcaaa 35125961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 4307483 - 4307405
Alignment:
Q  35 taacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa 114  Q
    ||||||||||||| ||| ||||||||||||||   |||||  |||||||| | | ||||||||||||||||||| |||||    
T  4307483 taacatttaccaaaaactttcttgagtatataaacttgttaaagtttcaggaat-aattttaaaagggtcacaattcaaa 4307405  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 30636831 - 30636936
Alignment:
Q  41 ttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa--tacttacttgtgactatttcatcc 138  Q
    ||||||||||| ||||||||||||||  ||| ||| |||||||||| ||| ||||||||||||||||| |||||    ||| |||||||||||||| |||    
T  30636831 ttaccaagaactttcttgagtatataaatttatttaagtttcagaaataatttttaaaagggtcacaattcaaaccccctttcttgtgactatttcttcc 30636930  T
Q  139 acttca 144  Q
    ||||||    
T  30636931 acttca 30636936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 8668501 - 8668388
Alignment:
Q  35 taacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgacta 130  Q
    ||||||||||||||||  |||||||||| |||   |||||  |||||||| ||||||||||||||||||||||| |||||      ||| ||||||||||    
T  8668501 taacatttaccaagaattttcttgagtacataaacttgtta-agtttcaggattaaattttaaaagggtcacaattcaaaccccccctttcttgtgacta 8668403  T
Q  131 tttcatccacttcaa 145  Q
    |||| ||||||||||    
T  8668402 tttcttccacttcaa 8668388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 17511832 - 17511720
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaatac---ttacttgtgacta 130  Q
    ||||||||| |||||||  ||||||||||||||   |||||  |||||||||||||||||| |||| |||||||| |||||  |   || ||||||||||    
T  17511832 ctaacatttgccaagaattttcttgagtatataaagttgtta-agtttcagaattaaatttaaaaatggtcacaattcaaacccccatttcttgtgacta 17511734  T
Q  131 tttcatccacttca 144  Q
    |||| |||||||||    
T  17511733 tttcttccacttca 17511720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12173969 - 12174024
Alignment:
Q  1 ttgttatatatctaatactctaatgttgttggactaacatttaccaagaaccttct 56  Q
    |||||||||||| || |||||||| |  || |||||||||||||||||||||||||    
T  12173969 ttgttatatatcaaacactctaatctaattagactaacatttaccaagaaccttct 12174024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 5377885 - 5377824
Alignment:
Q  5 tatatatctaatactctaatgttgttggactaacatttaccaagaaccttcttgagtatata 66  Q
    ||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  5377885 tatatatataatactctaatcttgttagaataacatttaccaagaaccttcttgagtatata 5377824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 26905714 - 26905582
Alignment:
Q  16 tactctaatgttgttggactaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaat 115  Q
    |||||||||  |||| ||||||||||||||||||||| |||||||||||||   ||  || |||||||| | ||| ||||||||||||||||| |||||     
T  26905714 tactctaatcatgttagactaacatttaccaagaaccatcttgagtatataaacttacttaagtttcaggaataatttttaaaagggtcacaattcaaac 26905615  T
Q  116 ac----ttacttgtgactatttcatccacttca 144  Q
     |    || |||||||||||||| |||||||||    
T  26905614 cccccatttcttgtgactatttcttccacttca 26905582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 21634156 - 21634207
Alignment:
Q  15 atactctaatgttgttggactaacatttaccaagaaccttcttgagtatata 66  Q
    |||||||||| |||||||| ||| ||  ||||||||||||||||||||||||    
T  21634156 atactctaatcttgttggattaatatcaaccaagaaccttcttgagtatata 21634207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 29029562 - 29029483
Alignment:
Q  35 taacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa 114  Q
    |||||||||| |||||  |||||||||||| |  ||||||  ||||||||||||||| || |||||||| |||| |||||    
T  29029562 taacatttactaagaaatttcttgagtataaaaatttgttaaagtttcagaattaaaattaaaaagggtaacaattcaaa 29029483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 124562 - 124641
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa 114  Q
    |||||||||||||||||  ||||||||||||||   |||||  |||||||| ||||||||| ||||||||||||| |||||    
T  124562 ctaacatttaccaagaattttcttgagtatataaagttgtta-agtttcaggattaaatttaaaaagggtcacaattcaaa 124641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 28344770 - 28344883
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa----tacttacttgtgact 129  Q
    |||||||||||||||||  |||||||||| |||   ||| || |||||||| ||||||||| |||| |||||||| |||||    | ||| |||||||||    
T  28344770 ctaacatttaccaagaattttcttgagtacataaacttg-ttaagtttcaggattaaatttaaaaatggtcacaattcaaacccctcctttcttgtgact 28344868  T
Q  130 atttcatccacttca 144  Q
    ||||| |||||||||    
T  28344869 atttcttccacttca 28344883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 2685 - 2798
Alignment:
Q  34 ctaacatttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaatac---ttacttgtgacta 130  Q
    |||||||||||||||||  || |||||||||||   ||| || |||||||| ||||||||| ||| ||||||||| |||||  |   || ||||||||||    
T  2685 ctaacatttaccaagaattttattgagtatataaagttg-ttaagtttcaggattaaatttaaaaggggtcacaattcaaacccccatttcttgtgacta 2783  T
Q  131 tttcatccacttcaa 145  Q
    |||| ||||||||||    
T  2784 tttcttccacttcaa 2798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 28070842 - 28070948
Alignment:
Q  41 ttaccaagaaccttcttgagtatatacttttgtttgagtttcagaattaaattttaaaagggtcacaactcaaa---tacttacttgtgactatttcatc 137  Q
    ||||||| ||| ||||||||||||||   |||||| ||||| |||| ||| ||||||||| ||||||| |||||   ||||| | ||||| |||||| ||    
T  28070842 ttaccaataactttcttgagtatataaacttgtttaagttttagaaataatttttaaaagtgtcacaattcaaaccctactttcctgtgattatttcttc 28070941  T
Q  138 cacttca 144  Q
    |||||||    
T  28070942 cacttca 28070948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 26331460 - 26331423
Alignment:
Q  77 agtttcagaattaaattttaaaagggtcacaactcaaa 114  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  26331460 agtttcagaattaaatttaaaaagggtcacaattcaaa 26331423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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